Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3p08
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    27   3.0  
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||...    27   4.0  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   5.2  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   6.9  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   6.9  
SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    26   6.9  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   6.9  
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.2  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   9.2  

>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 279 SESDNRERFRCFLLRLVMEHVPSPLTRLLS-NFDILIGQFSKHPA 148
           S SD+R R    L+R +++H    +T ++S + +  + QFS +P+
Sbjct: 368 SNSDSRARSAIVLVRGLLDHFDQKITSVVSTHINANLQQFSTNPS 412


>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 265

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 266 LSLSENTAKDCCRCCEILVHYLREVYK 346
           L++S N  KDC     + ++YL+E YK
Sbjct: 50  LAMSFNGGKDCLVLFLLCIYYLKEKYK 76


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 664 LVSWTRFSVFML*QMQLNLKKIQFKIFIFTLY*FYHF 774
           LVS TRFS+F+L    + + K  +KI  ++L   ++F
Sbjct: 28  LVSVTRFSLFLLSFATITVPKWAYKIVTYSLTIQFNF 64


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 368 NTRIVELFYKLCDISVCVCKDCY 436
           N++  + F KLC   +C+C D Y
Sbjct: 513 NSKKKKKFKKLCRPIICICNDLY 535


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 481  FLINEQNPT--NNLKNFITILTNAYGYIAELIKQ 386
            F+ +  NP   N +KN + I  N Y Y+ E +++
Sbjct: 989  FMFHSSNPNIVNLIKNDVYISPNGYAYVKENVRK 1022


>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 174 IGQFSKHPAAVRVVDNLRSAAKPPHISLDF 85
           +G+F   P    VV++ R    PPH+ LDF
Sbjct: 68  LGEFKLQPLGTIVVEDTR----PPHLRLDF 93


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 409 YIAELI-KQFYDSRVRFAADNEFVNLPEIMY*YFTAAAAVFSGVL 278
           Y+  LI ++FYD  V   A  +FV  P+++  +   +  V   V+
Sbjct: 469 YLTRLIMRKFYDFEVALEAIRDFVEYPDMIPTFIAVSIHVLQNVV 513


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 8   TDVRQRCYKFVVFLSRKTFFMSVLIEKSSEMCGGLAAERKLSTTRTAAG 154
           T  RQ+ Y FV F++ KT     +I K+ +    +  ERK++   TA G
Sbjct: 128 TSGRQKGYAFVEFINPKT----DVISKALKFHHTIYKERKINIELTAGG 172


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 500 MYHNSFISYKRTEPDK 453
           +Y N F+SY RTE D+
Sbjct: 322 LYTNGFVSYPRTETDQ 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,811
Number of Sequences: 5004
Number of extensions: 59653
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)