Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3p08
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0693 - 26334574-26336121                                         29   3.1  
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972...    29   4.1  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   4.1  
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     29   4.1  
02_01_0088 - 627825-628984,629339-629509,629612-630416                 29   4.1  
08_02_0685 + 20039318-20040433,20040574-20040982,20042906-200429...    28   7.2  
09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465           28   9.5  
07_03_1604 - 28089032-28089079,28089161-28089371,28089484-280898...    28   9.5  
05_01_0362 - 2832100-2832123,2832566-2832596,2832805-2833541,283...    28   9.5  

>11_06_0693 - 26334574-26336121
          Length = 515

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = -3

Query: 243 LLRLVMEHVPSPLTRLLSNFDILIGQFSKHPAAVRVVDNLRSAAKPPHIS 94
           LLRLV  H P PL   L N  I     S  P A R++ +LR    P  +S
Sbjct: 83  LLRLVPPHAPPPLP--LLNAAIKALSASSPPLAFRLLSSLRRLHAPDRLS 130


>09_02_0475 +
           9724676-9724936,9725518-9726216,9726273-9726596,
           9726900-9727847
          Length = 743

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/79 (22%), Positives = 34/79 (43%)
 Frame = +2

Query: 65  FMSVLIEKSSEMCGGLAAERKLSTTRTAAGCFENCPMRMSKFDRSRVSGLGTCSMTKRKR 244
           +++V   + +E+   +   R L     +  C E  P+ +  FD+ +   L  C   K K 
Sbjct: 552 YLNVSFFRITELPNEMCCLRSLEYLDLSKTCIEVLPLFVGAFDKLKYFNLHGCG--KLKN 609

Query: 245 KHRNLSLLSLSENTAKDCC 301
             +N+  L   E+ +  CC
Sbjct: 610 LPQNIGDLKRLEHLSLSCC 628


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -3

Query: 318 NISQQRQQSLAVFSESDNR-ERFRCFLLRLVMEHVPSPLTRL 196
           NIS++ + +L  FS + +R      FLLRL+++ VPSP  R+
Sbjct: 527 NISKEEENTLLKFSGNPDRLAPAEFFLLRLLLD-VPSPFARV 567


>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 101 CGGLAAERKLSTTRTAAGCFENCPMRMSKFDRSRVSGLGTC 223
           C  LA    ++ T    GC   CP  + + +    SG+G C
Sbjct: 139 CNSLAYVTSVNETEYMTGCMATCP-SVGRLENGSCSGMGCC 178


>02_01_0088 - 627825-628984,629339-629509,629612-630416
          Length = 711

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 149 AGCFENCPMRMSKFDRSRVSGLGTC 223
           AGCF  CP + S     + SG+G C
Sbjct: 124 AGCFSMCPDKQSVDSSGQCSGMGCC 148


>08_02_0685 +
           20039318-20040433,20040574-20040982,20042906-20042973,
           20043336-20043518,20043641-20043964,20045653-20045694
          Length = 713

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 299 CRCCEILVHYLREVYKFIVCCESNTRIVELFYKLCDISVC 418
           CRCC      L +   +  C +SN  I   F  +  ++VC
Sbjct: 537 CRCCHRHCLLLADSPAYCACAKSNCTIAVAFLAMLGMAVC 576


>09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465
          Length = 1058

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = +2

Query: 212 LGTCSMTKRKRKHRNLSLLSLSENTAKDCCRCC-EILVHY 328
           LG C      RK     +    E  A   CRCC E+ V Y
Sbjct: 69  LGACFCVDEGRKTPKTLIFPRDERNASSVCRCCREVGVRY 108


>07_03_1604 -
           28089032-28089079,28089161-28089371,28089484-28089853,
           28090034-28090199
          Length = 264

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = -1

Query: 194 CQTLTFSLDNSRSTPPL----SALWITCAPPLNRHTS 96
           CQT+ F+ D   S+PPL    S+ W+    PL +H+S
Sbjct: 14  CQTMLFTFDRVTSSPPLFSIISSWWMN---PLPQHSS 47


>05_01_0362 -
           2832100-2832123,2832566-2832596,2832805-2833541,
           2834333-2834825,2835762-2835770,2838062-2838561
          Length = 597

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 306 QRQQSLAVFSESDNRERFRCFLLRLVMEHVPSPLTR 199
           +R  + A+ + + NR  F CF L ++  H P  +TR
Sbjct: 393 RRMTNEALITIAKNRPNFTCFRLCILEPHTPDYITR 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,348,676
Number of Sequences: 37544
Number of extensions: 358930
Number of successful extensions: 767
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)