Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3p02
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   2.0  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    25   7.9  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    25   7.9  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 227 VSCSSRNRMTKGTMYLLMGYHNVSCSTLSAQ 319
           +SC SR ++ KG+ YLL  YH V    +S Q
Sbjct: 591 ISCLSR-KLVKGSEYLLRTYHEVIRIWISQQ 620


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 526 FGKFKRT*VPFILGISTKFKSRVTGFLKSI 437
           +GK++ T VPF  G+    K +V G +  I
Sbjct: 73  YGKYQGTWVPFQRGVDLATKYKVDGIMSPI 102


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 249 LLRELHDTYLYHTWIRKWVSDSCVAFNS 166
           +LR +H +  ++ W+RK   D C  FN+
Sbjct: 64  ILRLMHSSRQFYYWLRKSAVDEC-CFNN 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,526
Number of Sequences: 5004
Number of extensions: 46749
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)