Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3p02
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    28   5.6  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    28   5.6  
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ...    28   7.4  
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ...    28   7.4  
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ...    28   7.4  

>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
            protein C36B7.5b protein.
          Length = 1148

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 156  SCVRN*RLRKNRKPTYESKCGRGM 227
            SC    R+R+ R P  ESKCG G+
Sbjct: 1093 SCGEGRRMRRRRCPCGESKCGAGV 1116


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
            protein C36B7.5a protein.
          Length = 1121

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 156  SCVRN*RLRKNRKPTYESKCGRGM 227
            SC    R+R+ R P  ESKCG G+
Sbjct: 1066 SCGEGRRMRRRRCPCGESKCGAGV 1089


>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform c protein.
          Length = 1375

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 260 GTMYLLMGYHNVSCSTLSAQLRCFYY 337
           GT++  +GY N++C T + Q+    Y
Sbjct: 170 GTIFTTIGYGNIACKTRAGQIATMVY 195


>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform a protein.
          Length = 1544

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 260 GTMYLLMGYHNVSCSTLSAQLRCFYY 337
           GT++  +GY N++C T + Q+    Y
Sbjct: 170 GTIFTTIGYGNIACKTRAGQIATMVY 195


>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform b protein.
          Length = 1720

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 260 GTMYLLMGYHNVSCSTLSAQLRCFYY 337
           GT++  +GY N++C T + Q+    Y
Sbjct: 170 GTIFTTIGYGNIACKTRAGQIATMVY 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,752,712
Number of Sequences: 27780
Number of extensions: 253452
Number of successful extensions: 545
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)