Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3o21
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 30 0.29
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 29 0.68
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 28 1.2
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc... 28 1.2
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 27 2.7
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 3.6
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual 26 4.8
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 26 6.3
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 8.4
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 30.3 bits (65), Expect = 0.29
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 423 SIAVISIMENVSIRSWFVNPKSFVFLHHSL 334
SI+ IS++ + + +WF +P+S LH +L
Sbjct: 263 SISFISVIMGIDLGTWFASPESLSHLHDNL 292
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 29.1 bits (62), Expect = 0.68
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 145 SYDPEKYVLDNVSSTVLTDESL-TPGRPPCLTQRTIGKFLQPLTRELAEIP 294
S DP+KY+ + V ST SL P PP + QP+ + E+P
Sbjct: 188 SSDPKKYIPETVPSTPQPASSLPIPSSPPAALETEENVDSQPMELDEPELP 238
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +1
Query: 109 PTDPRSNISKLGSYDPEKYVLDNVSSTVLTDESLTPGRPPCLTQ--RTIGKFLQPLTREL 282
P PRS++ L Y K +LD+ ST+ E+ G L + RTI + P ++
Sbjct: 738 PHPPRSDLEALKLYRTRKEILDSFISTLNAYENQMHGERSILLELIRTILITINPTLKQK 797
Query: 283 AEIPPKPTI 309
+ P+ +
Sbjct: 798 EDSMPRSAL 806
>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
precursor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 55 FLRSNYLQYFVKMETTNHPTDPRSNISKLGSYDPEKY-VLDNVSSTVLT 198
+ +S Y + +ET N P ++ +L YD + Y +++ +SS+V T
Sbjct: 196 YTQSQYASVVIGIETVNEPLGYGLDMDQLKQYDLDAYNIVNPLSSSVAT 244
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 375 FVNPKSFVFLHHSLYHRTRQFIDSRLGRYFGKFSR 271
++NP+ F+F SL+ I S LGR FG SR
Sbjct: 546 YINPRFFLF--DSLFEVIISIILSFLGRAFGSISR 578
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 26.6 bits (56), Expect = 3.6
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = -2
Query: 513 IATIFYTIQVVLIRTRKYILMMWYNSFSRHS--IAVISIMENVSIRSWFVNPKSFVFLHH 340
+ TI ++ L+ K I ++ N++ H I VIS + S N V
Sbjct: 431 LRTIGVVTKMDLVPPSKAISILHNNNYPLHYGYIGVISRIVPTGRFSAGQNLTDLVSTQE 490
Query: 339 SLYHRT-RQFIDSRLGRYFG 283
+ Y T +QF D+R+G Y G
Sbjct: 491 NSYFSTHQQFADARIGNYLG 510
>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 351 FLHHSLYHRTRQFIDSRLGRY 289
FLH+ LYH++ + I ++ RY
Sbjct: 130 FLHNKLYHKSVRIIPLKIDRY 150
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.8 bits (54), Expect = 6.3
Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%)
Frame = +1
Query: 169 LDNVSSTVLTDES---LTPGRPPCLTQRTIGKFLQP-LTRELAEIPPKPTIDELPGPVIE 336
++N++ T++TD + + +P I F T +I E + E
Sbjct: 176 MENLADTIMTDLNNIWASLSKPEGFENSVINDFFDVGFTGLPHKILCSDAFSEAVDSLRE 235
Query: 337 RMVQKDKAFWVDKPGSNAYVLHDAYNSYGMTTETVIPHHQDVFPRSYQYDLDCIKYRRDH 516
R V + + ++ + + D ++ Y I +++D+ + Q L +YR D
Sbjct: 236 RFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDLDLPTQQQLL--AQYRCDE 293
Query: 517 ACDGLKQNIVTSQYVLNAEIVPN*MCQD 600
+ + T+ +L E +P +C+D
Sbjct: 294 IITEVMEPFSTACTILQKEFLPGNLCKD 321
>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 250 QLSSGLNKEVGLGLSFHQSILSMKHCPRRIFRGHMNL 140
QLS K++G QSILS+ P +F GH +L
Sbjct: 275 QLSLDGTKDLGPKF-LEQSILSIPDIPEDVFAGHNSL 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,319,037
Number of Sequences: 5004
Number of extensions: 75485
Number of successful extensions: 194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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