Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o21
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0016 - 13761007-13761489,13761929-13762096,13763086-137631...    30   2.2  
04_03_0553 + 17070833-17071244,17072370-17072453,17072734-170727...    29   5.0  
03_02_0511 + 9016215-9016425,9017292-9017365,9018399-9018609,901...    28   6.6  
01_05_0737 - 24780952-24781100,24781515-24783453                       28   6.6  
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19...    28   6.6  

>03_03_0016 -
           13761007-13761489,13761929-13762096,13763086-13763130,
           13763380-13763447,13763532-13763586,13763659-13763814,
           13763904-13764002,13764792-13764872,13765513-13765636,
           13765938-13766032,13766434-13766560,13766768-13766871,
           13767278-13767359,13768012-13768049
          Length = 574

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 418 YGMTTET--VIPHHQDVFPRSYQYDLDCIKYRRDH 516
           +G  TE   ++PHH D    SY  D + IK+  DH
Sbjct: 228 FGHATEDDFILPHHSDKIYESYVGDKNIIKFDGDH 262


>04_03_0553 +
           17070833-17071244,17072370-17072453,17072734-17072759,
           17073514-17073660
          Length = 222

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 223 PPCLTQRTIGKFLQPLTRELAEIPPKPTIDELPGPVIER 339
           PPCL        L  LTR+ A      ++DELPG   ER
Sbjct: 88  PPCLQSGGSSGGLLVLTRDEAPAVKASSVDELPGGGTER 126


>03_02_0511 +
           9016215-9016425,9017292-9017365,9018399-9018609,
           9019235-9019263,9019646-9020798,9021022-9021251
          Length = 635

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 97  TTNHPTDPRSNISKLGSYDPE-KYVLDNVSSTVLTDESLTPGRPP 228
           + N P  P SN+  +G Y  E + V   V ST  T+ S  P  PP
Sbjct: 245 SANSPGGPTSNMFAVGPYANEPQLVSPPVFSTYTTEPSTAPLTPP 289


>01_05_0737 - 24780952-24781100,24781515-24783453
          Length = 695

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -3

Query: 221 RPGVKLSSVNTVDETLSKTYFSGSYEP-NLEILLLGSVG*FVVSIFTKYCR*FERKKSYF 45
           R G +L  V+ + E+ +  +F G  +    E+ LL SV    V+    YC   E KK YF
Sbjct: 239 RLGGRLKEVHWMGESFAMKHFIGDTDAAGAEVALLCSVAHPNVA-HAAYCFHDEEKKEYF 297

Query: 44  *IISWLVA 21
            ++  L+A
Sbjct: 298 VVMDQLMA 305


>01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-192161,
            192248-192356,192401-192496,192724-193994,194200-194384,
            194619-195055,197034-197077,197830-199036,199253-199479
          Length = 1411

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 97   TTNHPTDPRSNISKLGSYDPE-KYVLDNVSSTVLTDESLTPGRPP 228
            + N P  P SN+  +G Y  E + V   V ST  T+ S  P  PP
Sbjct: 1021 SANSPGGPTSNMFAVGPYANEPQLVSPPVFSTYTTEPSTAPLTPP 1065


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,152,577
Number of Sequences: 37544
Number of extensions: 478229
Number of successful extensions: 1213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)