Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o21
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00053-1|AAZ94293.1|  548|Caenorhabditis elegans Acetylcholine r...    30   1.5  
Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic acety...    30   1.9  
U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic acety...    30   1.9  
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    30   1.9  
AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical ...    29   3.4  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U00053-1|AAZ94293.1|  548|Caenorhabditis elegans Acetylcholine
           receptor protein 5 protein.
          Length = 548

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 418 YGMTTETVIPHHQDVFPRSYQYDLDCIKYRR 510
           YGM   T++P+HQ   P +Y Y+ + ++ ++
Sbjct: 174 YGMINRTIVPYHQIWIPDTYLYNSEELEQKK 204


>Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical
           protein K03B8.9 protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 412 NSYGMTTETVIPHHQDVFPRSYQYDLDCIKYRRD 513
           N YGM   T+IP H    P +Y Y  + +K  RD
Sbjct: 119 NEYGMINSTIIPFHHLWIPDTYLY--NSVKMSRD 150


>U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit precursor protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 412 NSYGMTTETVIPHHQDVFPRSYQYDLDCIKYRRD 513
           N YGM   T+IP H    P +Y Y  + +K  RD
Sbjct: 119 NEYGMINSTIIPFHHLWIPDTYLY--NSVKMSRD 150


>U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 412 NSYGMTTETVIPHHQDVFPRSYQYDLDCIKYRRD 513
           N YGM   T+IP H    P +Y Y  + +K  RD
Sbjct: 119 NEYGMINSTIIPFHHLWIPDTYLY--NSVKMSRD 150


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 85
            protein.
          Length = 2203

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -1

Query: 169  RRIFRGHMNLIWKYCF*DQLDDLSFPFLRNIADSSSVKKVIFK*FHGLW 23
            +R+ R    +  K+   + + D+    +R + D   VKK++F+ F  LW
Sbjct: 1403 KRVIRIMREICEKFPTFEMIPDMLARMIRRVTDEEGVKKLVFETFTTLW 1451


>AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical
           protein Y22F5A.2 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -2

Query: 516 MIATIFYTIQVVLIRTRKYILMMWYN-SFSRHSIAVIS-IMENVSIRSWFVNP 364
           +++T +Y +   L    K I     N SF +HS+AVIS IM+N+    +F+ P
Sbjct: 210 ILSTSYYILYAQLYIMLKSIKTRISNRSFKKHSVAVISTIMQNLVFAFFFLFP 262


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
 Frame = -2

Query: 615 VEMDSVLAHLIWYNLGIEHVLACYYVLF*SIASMIATIFYTIQVVLIRTRKYILMMWY-- 442
           + ++   A  +WYN   +  L   Y L  S+ S IATI     ++    + Y L   Y  
Sbjct: 106 LSLNRFCATWVWYNTYFDKPLIKLYFLIISLVSFIATIPGGTLMIFYFFKDYSLSAQYGK 165

Query: 441 ---NSFSRHSIAVISIMENVSIRSWFVN 367
              +SF+ H   +  +M   ++ S+F +
Sbjct: 166 TGLDSFNFHRTIIAVMMITDALISFFTS 193


>Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical
           protein T19B10.5 protein.
          Length = 705

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
 Frame = +1

Query: 88  KMETTNHPTDPRSNISKLGSYD-PEKYVLDNVSSTVLTDESLTPGRPPCLTQRTIGKFLQ 264
           +M+++++ +D  S+  +  + D  +K + D +  T +  + +    PP L +      L 
Sbjct: 407 RMDSSDYGSDGISDCRESTASDGTQKTLSDRIEVTDIIFDKVKSPTPPPLRKLEQCTELP 466

Query: 265 PLTRELAEIPPKPTIDELPGPVIERMVQKDKAFWVD 372
           P  R++    P P     P P + R     K+  V+
Sbjct: 467 PKPRKMVSRSPSPVNKPPPSPKVSRATSPKKSQQVE 502


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,277,666
Number of Sequences: 27780
Number of extensions: 423206
Number of successful extensions: 1253
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)