Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o19
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.9  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   3.8  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   3.8  

>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +1

Query: 298 WFMKRYAFKCGKLKFIRKLLN--WNQHQIIPLAYIWFCI 408
           WF   Y+   G    I   L   +   ++  L YIWFCI
Sbjct: 86  WFPASYSLTVGTFILIAGRLGDIYGHKKMFVLGYIWFCI 124


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 129 FVESMEPSRIDSIGNQAWVDWHIRLQKLNQQAVLEASSMREE 254
           F  SM+P+ +   GN A  D+H++L  L +Q        R+E
Sbjct: 591 FSMSMDPANMQQ-GNHALSDYHMQLMLLEEQNKKRLMMARQE 631


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 289 SFPQEIRVSLVSSSRIEDASRTACWFNFWSLMCQSTH 179
           SFP E +VS++ +S ++ +     WF   + +C  TH
Sbjct: 171 SFPSEPQVSVLFTSSVKRSPHGVSWF---ATICSETH 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,696
Number of Sequences: 5004
Number of extensions: 69768
Number of successful extensions: 163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)