Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o19
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC199170-6|ABO33264.1|  325|Caenorhabditis elegans Hypothetical ...    33   0.29 
Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical pr...    32   0.38 
Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical pr...    32   0.38 
Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical pr...    32   0.38 
Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical pr...    32   0.38 
L16560-5|AAA27996.1|  443|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    30   2.0  
U41996-3|AAA83472.2|  362|Caenorhabditis elegans More of ms prot...    29   3.6  
AF013952-1|AAC47749.1|  362|Caenorhabditis elegans mom-2 protein.      29   3.6  
U97008-5|AAB52311.2|  338|Caenorhabditis elegans Serpentine rece...    28   6.2  
Z81049-5|CAE17733.2|  197|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AC199170-6|ABO33264.1|  325|Caenorhabditis elegans Hypothetical
           protein T08D2.5 protein.
          Length = 325

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = -3

Query: 385 KVLFGAGSSLTICG*ILIFHT*M---HIAS*TNTGSFPQEIRVSLVSS-SRIEDASRTAC 218
           +++FGAGS+    G I I ++ +   H  S  NT +F   ++ S  SS S    +S   C
Sbjct: 240 QMIFGAGSTFYKNGKIRILYSCINFIHFQSLLNTSTFTSWLQSSSFSSASSSSTSSEQCC 299

Query: 217 WFNFWSLMCQS 185
            F F  L+CQ+
Sbjct: 300 TFIFIYLLCQN 310


>Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +3

Query: 519 TALLALINTGYLKPISVNDI-ECESPI-EELERQKRDLQFDISMRCISIVRYLAEHME 686
           +A L L+      PI+ N I + E  I EE+ERQK+D Q +I   C S++R L  ++E
Sbjct: 757 SAPLILVEDHKDGPITSNQISDTERRISEEIERQKKDEQ-EIEKSCRSVIRDLLNYVE 813


>Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +3

Query: 519 TALLALINTGYLKPISVNDI-ECESPI-EELERQKRDLQFDISMRCISIVRYLAEHME 686
           +A L L+      PI+ N I + E  I EE+ERQK+D Q +I   C S++R L  ++E
Sbjct: 762 SAPLILVEDHKDGPITSNQISDTERRISEEIERQKKDEQ-EIEKSCRSVIRDLLNYVE 818


>Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +3

Query: 519 TALLALINTGYLKPISVNDI-ECESPI-EELERQKRDLQFDISMRCISIVRYLAEHME 686
           +A L L+      PI+ N I + E  I EE+ERQK+D Q +I   C S++R L  ++E
Sbjct: 757 SAPLILVEDHKDGPITSNQISDTERRISEEIERQKKDEQ-EIEKSCRSVIRDLLNYVE 813


>Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +3

Query: 519 TALLALINTGYLKPISVNDI-ECESPI-EELERQKRDLQFDISMRCISIVRYLAEHME 686
           +A L L+      PI+ N I + E  I EE+ERQK+D Q +I   C S++R L  ++E
Sbjct: 762 SAPLILVEDHKDGPITSNQISDTERRISEEIERQKKDEQ-EIEKSCRSVIRDLLNYVE 818


>L16560-5|AAA27996.1|  443|Caenorhabditis elegans Hypothetical
           protein D2007.5 protein.
          Length = 443

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = +2

Query: 17  LYRKKYNTKTLN*VFRNFKNGRKRSTIKCTRCR*IGLIRRKYGTISY*QYWQSSMGRLAH 196
           LY KK + +T   ++R F+N       K  + R IG +  K+G IS   ++++SM     
Sbjct: 132 LYVKKQHLETFVIMYRVFENDISSDMGKGKKTRKIGELVSKFGNISLDLHYRTSM---HF 188

Query: 197 QTPKIKPTS 223
           + P+I P +
Sbjct: 189 EEPEIAPVT 197


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
            protein Y47D3B.7 protein.
          Length = 1113

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 388  AYIWFCITKQPRWDCWKLFCFTRTARPVSPKSP 486
            AY  + I    R DCW+LF +  T R ++  +P
Sbjct: 1034 AYNHYAIINGTRGDCWRLFVYELTCRMLNGANP 1066


>U41996-3|AAA83472.2|  362|Caenorhabditis elegans More of ms protein
           2 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 385 LAYIWFCITKQPRWDCWKLFCFTRTARPVSPKSPLICSN 501
           LA I+F +      D W L   T T+   S  SP++C N
Sbjct: 9   LAIIYFLVFAPKSADAWWLLSKTDTSSANSGSSPILCKN 47


>AF013952-1|AAC47749.1|  362|Caenorhabditis elegans mom-2 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 385 LAYIWFCITKQPRWDCWKLFCFTRTARPVSPKSPLICSN 501
           LA I+F +      D W L   T T+   S  SP++C N
Sbjct: 9   LAIIYFLVFAPKSADAWWLLSKTDTSSANSGSSPILCKN 47


>U97008-5|AAB52311.2|  338|Caenorhabditis elegans Serpentine
           receptor, class h protein231 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = -1

Query: 213 LIFGV*CANLPMLDCQYCQYEMVPYFRRISPIHLHRV--HLIVDLFLPFLKFLNT*FKVL 40
           LI  + C    +L+C    Y       R +    HR+   LI+   + F+ FL     ++
Sbjct: 198 LIPTIECGTFLLLNCYNLIYTSSSGISRHTVKMQHRLVLALIIQSSITFILFLIPISMII 257

Query: 39  VLYFFRYKNAIYS 1
           +  +FRY+N I++
Sbjct: 258 LFVYFRYQNQIFN 270


>Z81049-5|CAE17733.2|  197|Caenorhabditis elegans Hypothetical
           protein C48D1.5 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 374 WCWFQFNNLRINFNFPHLNAYRFINQYGQFSTRN*SFFSKL 252
           W  F+  +L I + FP +N Y F+       ++N   F ++
Sbjct: 103 WDNFKQRHLEIPYEFPEVNGYIFVEDLSPICSKNGILFLRI 143


>U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical
           protein C23F12.2 protein.
          Length = 941

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 195 CANLPMLDCQYCQYEMVPYFRRISPIHLHRVHL 97
           C  +  L C  C + +V Y R  SPI +  +H+
Sbjct: 900 CEGVQNLICSACLFFLVKYTRHASPIIIRLIHV 932


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,851,757
Number of Sequences: 27780
Number of extensions: 385633
Number of successful extensions: 1049
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)