Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o18
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    32   0.092
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.49 
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    27   2.6  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    27   3.5  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   6.1  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.1  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   8.0  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 31.9 bits (69), Expect = 0.092
 Identities = 17/66 (25%), Positives = 35/66 (53%)
 Frame = +1

Query: 283 VYISELIDEICKKMDDYVRVYYKSTGKLTIMQLMTKEGGMNPEFSKTKFVTDDDLNKSLE 462
           ++I  L DE+    D+ ++  + + G +T  ++MT E G +  F    + T ++ NK++ 
Sbjct: 366 LFIKNLQDEVD---DERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVT 422

Query: 463 YYCERM 480
              +RM
Sbjct: 423 EMNQRM 428


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 181 IKSIDKWKRVDVGNFRMDKDGNTMQQKVPAHRSAVYISELIDEI--CKKMDDYVRV 342
           IK I++ KR+D     + +   T Q   P     +++  L+DE   C+ +DDYVR+
Sbjct: 47  IKLIEELKRLDKKK-ELSEARKTFQSIFPLSED-LWVDYLLDECKNCRTLDDYVRI 100


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 529 DDDVMPDAEREICFN--HAKYCEEWMLPTEE 615
           D   +PDAEREI  N   A+Y ++W+   E+
Sbjct: 103 DTSFLPDAEREIRENAKRAEYRKQWLKEQEQ 133


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
 Frame = +1

Query: 214 VGNFRMDKD---GNTMQQKVPAHRSAVYISELIDEICKKMDDYVRVYY--------KSTG 360
           V    +DK+   GN   QK  ++ S +Y+    + +      Y RV           S  
Sbjct: 53  VSEASLDKESTVGNLENQKNRSYSSEIYLHSDTNFLSNFDSAYERVRRLLNQQGGKSSLQ 112

Query: 361 KLTIMQLMTKEGGMNPEFSKTKFVTDDDLNKSLEYYCER 477
           K  + Q+ T+EGG N + S +    D D N  L+   E+
Sbjct: 113 KKEVEQIETQEGGDNAKGSPSSENKDSDRNSRLQQLIEK 151


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +1

Query: 436 DDDLNKSLEYYCERMFEDNEDEITSL----YVKRPDDDVMPDAEREICFNHAKY 585
           D+  +++  YY +R+F+ N +++  +     VK   DDV+ D  +   F   +Y
Sbjct: 196 DEYKSQAKSYYFDRLFDQNINKVFDVVPVTQVKNAPDDVLEDLFKNYDFIVTEY 249


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 400 MNPEFSKTKFVTDDDLNKSLEY---YCERMFEDNEDEITSLYVK 522
           + P F+    V   D N ++     + E + ED+ED++  +Y K
Sbjct: 67  LTPRFTSNSMVLPGDHNTTVRLKPSFREALMEDSEDDLYQMYSK 110


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +1

Query: 454 SLEYYCERMFEDNEDEITSLYVKRPDDDVMPDAEREICFNHAKYCEEWMLPTEE 615
           ++EY  + +   + +E+ ++Y+K  ++ V P  ++ IC        EW+L T +
Sbjct: 530 AVEYVYDEVVSVSPEEVHTVYLKSIEEPVEPSYKKLIC------TLEWLLITSQ 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,758
Number of Sequences: 5004
Number of extensions: 60539
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)