Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o18
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13070-11|AAK67223.1|  193|Caenorhabditis elegans Hypothetical p...    43   2e-04
Z79754-5|CAB02094.2|  573|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...    29   3.3  
U41990-3|AAY44010.1|  291|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U41014-4|AAK32946.3|  557|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPas...    28   7.5  
AC024818-2|AAF60781.1|  302|Caenorhabditis elegans Temporarily a...    28   7.5  
U55857-9|AAM98002.1|  201|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U13070-11|AAK67223.1|  193|Caenorhabditis elegans Hypothetical
           protein F01F1.15 protein.
          Length = 193

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = +1

Query: 58  MRLNSLIFAFVILFSVVSARIDPKNLKCLVCRTTFEELHQVIKSIDKWKRVDVGNFRMDK 237
           M   S +   + L  + SA +   +L+C  C          I ++D  K+++VG+FR+  
Sbjct: 1   MHFVSTLVCLISLSGIQSASVS--SLECGACSLLVTHFELKIAAVDPKKKIEVGSFRVSP 58

Query: 238 DGNTMQQK-VPAHRSAVYISELIDEICKKMDDYVRVYYKSTGK 363
            G+    K +   RS  +++E+I+  C     Y  V    TGK
Sbjct: 59  TGDQKGLKEIGYARSESHLTEIIEHACDDAKHYKLVVNTITGK 101


>Z79754-5|CAB02094.2|  573|Caenorhabditis elegans Hypothetical
           protein F25H2.6 protein.
          Length = 573

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = +1

Query: 355 TGKLTIMQLMTKEGGMNPEFSK----TKFVTDDDLNKSLEYYCERMFEDNEDEITSLYVK 522
           T K+ I  + +      P F +    T+ V+   L +      E M +DN    TS  + 
Sbjct: 203 TSKVVIPNIPSSSSSTPPPFREPLCATRSVSSSVLRRESIVEQEYMSDDNSTMTTSTIIA 262

Query: 523 RPDDDVMPDAE 555
           RPD DV  D +
Sbjct: 263 RPDIDVTSDCD 273


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/74 (27%), Positives = 31/74 (41%)
 Frame = -1

Query: 499 RPRCLQTYVRSNTPSFCXXXXXXXXXXXXXXXSCRPPWSSAALSSVYRSTCSKRGRSHPS 320
           RP C  + + S + S C               +C P  SSA + +V  STC+    + PS
Sbjct: 171 RPTCASSCMPSCSQS-CIQKYEITVEQETCVPACMPACSSACVQAVTCSTCT---NNCPS 226

Query: 319 FCRSHQ*VQKCRPQ 278
            C     + +C P+
Sbjct: 227 ICSQANCIPQCMPR 240


>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 208 VDVGNFRMDKDGNTMQQKVPAH 273
           V +GN R+DKD +TM++ +  H
Sbjct: 41  VSIGNIRLDKDNDTMKEVLKQH 62


>U41990-3|AAY44010.1|  291|Caenorhabditis elegans Hypothetical
           protein F52B10.2 protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 245 TQCSRKCPLIGLRSTFLNLLMRSAKRWMTTSAFTTSRPVN 364
           TQ S K   +GL  +F  + + +   W+ T+  T +R VN
Sbjct: 130 TQSSSKRKRVGLMPSFETMAVGNCANWLRTNCTTKTRGVN 169



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +1

Query: 316 KKMDDYVRVYYKSTGKLTIMQLMTKEGGMNPEFSKTKFVTDDDLNKSLEYYCERMFEDNE 495
           K+  D + V  K +G   +++ +     +     +  F  D + NK LE+Y E+M E   
Sbjct: 26  KRFPDAIIVGVKKSGTRALLEFLRVNPLIKAPGPEVHFF-DKNFNKGLEWYREQMPETKF 84

Query: 496 DEIT 507
            E+T
Sbjct: 85  GEVT 88


>U41014-4|AAK32946.3|  557|Caenorhabditis elegans Hypothetical
           protein C06G1.5 protein.
          Length = 557

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 355 TGKLTIMQLMTKEGGMNPEFSKTKFVTDDDLNKSLEYYCERMF 483
           +G+LT  +L  ++GG+       +F  DDD+NKSL Y+    F
Sbjct: 290 SGRLTTERL--RKGGVLQAIRNLQF--DDDINKSLRYFSYEHF 328


>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 691 RPQSRTGPARGP*HTPPPFLWSKSCPLQW 605
           RP     P R P  TPPP   + SCP  W
Sbjct: 49  RPPRPNRPPRPPPATPPPTTPAPSCPGGW 77


>Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical
           protein K11D9.2b protein.
          Length = 1004

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 478 MFEDNEDEITSLYVKRPDDDVMPDAEREIC 567
           +F +NED     Y  R  DD+ P+ + E C
Sbjct: 642 LFGENEDTTGKAYTGREFDDLPPEQQSEAC 671


>Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical
           protein K11D9.2a protein.
          Length = 1059

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 478 MFEDNEDEITSLYVKRPDDDVMPDAEREIC 567
           +F +NED     Y  R  DD+ P+ + E C
Sbjct: 642 LFGENEDTTGKAYTGREFDDLPPEQQSEAC 671


>U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical protein
            C54G7.4 protein.
          Length = 1199

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 100  SVVSARIDPKNLKCLVCRTTF 162
            SV  A+IDP +L+C  C+T F
Sbjct: 1131 SVCDAKIDPYDLQCSECQTKF 1151


>AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPase
           protein.
          Length = 1059

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 478 MFEDNEDEITSLYVKRPDDDVMPDAEREIC 567
           +F +NED     Y  R  DD+ P+ + E C
Sbjct: 642 LFGENEDTTGKAYTGREFDDLPPEQQSEAC 671


>AC024818-2|AAF60781.1|  302|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 262 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +1

Query: 337 RVYYKSTGKLTIMQLMTKEGGMNPEFSKTKFVTDDDLNKSLEYYCERMFEDNEDEITSL 513
           RV+    G     +L+ K     P F K K V +   NKS + Y    F D+ED + ++
Sbjct: 204 RVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKS-KGYGFVSFRDSEDYVRAM 261


>U55857-9|AAM98002.1|  201|Caenorhabditis elegans Hypothetical
           protein K08D10.12 protein.
          Length = 201

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 331 SHPSFCRSHQ*VQKCRPQTDERALSAALCCH 239
           S P+ C + + V  C P TDE  +SA  CC+
Sbjct: 141 SSPNTCHA-EFVLICAPITDEERISAMRCCN 170


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 661 HGPDPYGFGGVPPP 702
           H P P  FGG PPP
Sbjct: 357 HAPSPQSFGGPPPP 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,593,656
Number of Sequences: 27780
Number of extensions: 364406
Number of successful extensions: 1207
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)