Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o16
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    28   1.5  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   6.1  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    26   6.1  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   8.1  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   8.1  

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +3

Query: 432 LSYTASLAEICRRSEPLVLSPGSMKEKKMISNEN--ILANLLRVKRSISYETIMFANDMR 605
           L Y   LA      EP   +PG +++  M  N+       L  ++ SIS+ + +F+N ++
Sbjct: 441 LKYVMDLATF---EEPYDFNPGQIEKFIMNGNKKGAFSIRLNHIENSISFSSDLFSNPIK 497

Query: 606 EQFKTMIKSMDTPQSQEPLSSIVESTNGYVL 698
                 ++S  +      L+ I +S +  ++
Sbjct: 498 SSDSVSLQSTPSELITSQLTRIAKSLSSVLM 528


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 231 IIGIFAYFATIIYHGMYIPLQNIIRLIFSKNIY 329
           + G   YFAT + HG++I +  I+ L+ + NIY
Sbjct: 204 VYGASFYFATGL-HGIHIIVGTILLLVATYNIY 235


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 443 RVRKQSFYRESYDQ*EQREPSNYIVLFDTTQQD*FFDLVNVFRKYQPYDVLK 288
           R R +  + E  D  E+ +PS    L+DT + D   +   + R + PY  LK
Sbjct: 652 RERWEKLFSEFCDS-EKADPSKVSELYDTLKYDALHNRQFLERIFTPYQYLK 702


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
            Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 417  RKLRPIRTERTQQLYSSFRHDSARLVFRPRKCF*KISAV*CSEEECTCHGR 265
            RKL  +RT+   +LY S R+ + +LV + ++ F +      +    T H R
Sbjct: 983  RKLITLRTKELFELYLSQRNFTGKLVIKHQEEFLEPRVYPANRNLATAHNR 1033


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 239 NFRLFCYYHLPWHVHSSSEHHTADIF*KHLRGRKTNLAESCR 364
           N ++ C   +  H  S+ +H+  ++F    +GR  +  E CR
Sbjct: 6   NVKMACMKCIRGHRSSTCKHNDRELFPIRPKGRPISQCEKCR 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,608
Number of Sequences: 5004
Number of extensions: 58507
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)