Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o14
         (273 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   1.1  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    24   4.4  
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family...    23   5.9  

>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 45  HSNQRPPQHRPHEH 4
           H + RPP H PH H
Sbjct: 170 HPHTRPPHHPPHPH 183


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 81  HVAWHEQRQVKQHSNQRPPQHRPHEHS 1
           H  +HE+RQ     +  PP  R  E S
Sbjct: 28  HTGFHEKRQGASSESLIPPAQRSSEES 54


>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 45  HSNQRPPQHRPHE 7
           HSN  PP+  PHE
Sbjct: 85  HSNLEPPRKDPHE 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 682,627
Number of Sequences: 5004
Number of extensions: 7507
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)