Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o14
         (273 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185...    34   0.013
01_06_0451 - 29476892-29477516,29477600-29477843,29478313-294787...    26   3.6  
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899...    23   4.5  
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129...    26   4.7  
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657           26   4.7  
01_01_0139 + 1263356-1264273                                           25   6.3  
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124...    25   8.3  

>03_01_0238 +
           1854070-1854344,1854621-1854712,1854852-1855045,
           1855529-1855568,1855734-1855815,1856972-1857049,
           1857144-1857269,1857544-1857665,1858018-1858057,
           1858250-1858324,1858414-1858585
          Length = 431

 Score = 34.3 bits (75), Expect = 0.013
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 265 RRSSWTPTAXXPLAXARGRRRSENETSPSLPYP 167
           R   W      P A ARGRRR+     PSLP+P
Sbjct: 57  RTEEWRIDGNKPAAAARGRRRASLTAMPSLPFP 89


>01_06_0451 -
           29476892-29477516,29477600-29477843,29478313-29478714,
           29481164-29481358,29481418-29481537,29481615-29481683,
           29481901-29481999,29483857-29483946,29484049-29484180,
           29485062-29485173
          Length = 695

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 51  KQHSNQRPP-QHRPHEHS 1
           KQHS+  PP  HRPH+ S
Sbjct: 192 KQHSSNLPPSHHRPHKGS 209


>05_05_0155 +
          22787658-22787930,22788029-22788096,22789600-22789915,
          22790207-22790323
          Length = 257

 Score = 22.6 bits (46), Expect(2) = 4.5
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 48 QHSNQRPPQHRPH 10
          +H +  PP H PH
Sbjct: 32 RHPHHHPPHHHPH 44



 Score = 21.8 bits (44), Expect(2) = 4.5
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -1

Query: 30  PPQHRPHEH 4
           PP H PH H
Sbjct: 74  PPHHHPHPH 82


>10_08_0630 -
           19410852-19411235,19411370-19412257,19412440-19412941,
           19413662-19414135,19414982-19415040,19415468-19415629
          Length = 822

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 48  QHSNQRPPQHRPHEHS 1
           QH +Q+PPQHR H+ S
Sbjct: 768 QHHHQQPPQHR-HQQS 782


>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
          Length = 390

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 81  HVAWHEQRQVKQHSNQ--RPPQHRPHEHS 1
           H   HEQ+Q +QH +    PP   PH H+
Sbjct: 45  HGHHHEQQQQQQHHHHLGPPPPPPPHPHN 73


>01_01_0139 + 1263356-1264273
          Length = 305

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 253 WTPTAXXPLAXARGRRRSENETSPSLP 173
           W P++  P + A  RR +   TSP+ P
Sbjct: 106 WRPSSRRPRSSAPTRRTAAGATSPTTP 132


>01_06_1409 -
          37111954-37112061,37112295-37112330,37112434-37112498,
          37112610-37112688,37112967-37113041,37113623-37114147
          Length = 295

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 33 RPPQHRPH 10
          RPPQHRPH
Sbjct: 15 RPPQHRPH 22


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,947,999
Number of Sequences: 37544
Number of extensions: 59787
Number of successful extensions: 233
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)