Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o14
         (273 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   3.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   3.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   3.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   4.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    19   8.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 196 NETSPSLPYPISHNS 152
           N+T PSLP  ++ NS
Sbjct: 672 NKTLPSLPSTLTKNS 686


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = -1

Query: 69  HEQRQVKQHSNQRPPQH-RPHE 7
           H Q Q  QH +Q   QH + HE
Sbjct: 178 HMQPQQGQHQSQAQQQHLQAHE 199


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -1

Query: 30  PPQHRPHEH 4
           PP + PH+H
Sbjct: 313 PPSYHPHQH 321


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 4.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 156 LCDIG*GREGDVSFSLRRLPR 218
           LC++   R+G  S SL   PR
Sbjct: 120 LCEVPESRDGPPSVSLSSPPR 140


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 216 EAGVGVRTKHRPLFLTQYH 160
           ++G   RTK+ PL + Q+H
Sbjct: 60  QSGEYDRTKNYPLDVDQWH 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,446
Number of Sequences: 438
Number of extensions: 550
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)