Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3o11
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 31 0.12
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 29 0.64
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 29 0.84
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 27 2.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.4
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 26 4.5
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.9
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 26 5.9
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 31.5 bits (68), Expect = 0.12
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Frame = +2
Query: 251 KLKVLPEKQSVNKSRISQDISKPLLVHE---TVKSEVEGRSALSMLEIVEGKGLINRVFE 421
+++ + K + N S + + KP+L HE VKS VE + + I+ + ++ +
Sbjct: 1082 EMQCVQAKFTYNDSNAYEKVFKPMLFHECWAQVKSAVEEKQYPPIDLILNTRSTVDNFVD 1141
Query: 422 TKMPQSSCAVSDREYL---DHCIIERRQSLKLTKKPASTKL 535
+SC+ ++ +L D C++ + QS T P S +L
Sbjct: 1142 IYF--TSCSPTEVSFLSDTDICLLSKSQSSGDTNNPKSFQL 1180
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 29.1 bits (62), Expect = 0.64
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = +2
Query: 296 ISQDISKPLLVHETVKSEVEGRSALSMLEIVEGKGLINRVFETKMPQSSCAVSDREYLDH 475
+ D P+ + ++K + S++ + I G + + S A +YL +
Sbjct: 137 VHMDNISPVTTNGSLKESLRKYSSIIAVNIFSETGDLKKGIAIFQDLSD-AEQAVQYLSN 195
Query: 476 CIIERRQ-SLKLTKKPASTKLKGKSSKADTLTNSPKMDSADEVTKLKKAMYEW 631
C I+ R S +T P + ++ T T D D++TKL +A EW
Sbjct: 196 CKIDGRLISATITNHPKRLP-NAEHLESSTKTKDESQDK-DKLTKLDRAKLEW 246
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 28.7 bits (61), Expect = 0.84
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2
Query: 518 PASTKLKGKSSKADTLTNSPKMDSADEV 601
P+ST++ K+S +TLT S K DS+D+V
Sbjct: 100 PSSTRVPSKNSSYETLTYSAK-DSSDDV 126
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 27.1 bits (57), Expect = 2.6
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = -2
Query: 648 FGCLASHSYMAFFSLVTSSALSILGEL-VRVSALEDFPFSFVLAGFFVSFKLCLRSMMQ* 472
F CL SL TS+ L ++ L V LED S G F + L++M
Sbjct: 935 FSCLQLICTDFLASLDTSNYLDLMDTLLVFCRQLEDANVSLTAVGLFWNVSDTLKNMFST 994
Query: 471 SRYSLSLTAHEDCGILVS-KTRLIKP 397
S +S + + ED S K++ I P
Sbjct: 995 SDFSCAYNSVEDLYAFTSMKSKEILP 1020
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 135 SSPQPPPLKMLLWVVKLFMSGGSVSLVSKIFKS 37
SS P L +LW++ + S GSVS V FKS
Sbjct: 2962 SSNSKPLLTRVLWLLSVDDSHGSVSEVVSSFKS 2994
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 4.5
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = +2
Query: 140 LAQNVVFDFTPNEEDNAYTMNKCCDFWEAVG-GCAELKKLKVLPEKQSVNKSRISQDISK 316
L Q + P+ E + T++ W+ + G +K P K V+ S Q K
Sbjct: 184 LPQPIAAPAPPSAESSKSTISDEDVAWQLIRLGALSSNSVKSSPSKSFVSISSPVQSTVK 243
Query: 317 PLLVHETVKSE-VEGRS 364
P VKSE VE RS
Sbjct: 244 PTKASGVVKSEKVEKRS 260
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 5.9
Identities = 29/92 (31%), Positives = 38/92 (41%)
Frame = +2
Query: 248 KKLKVLPEKQSVNKSRISQDISKPLLVHETVKSEVEGRSALSMLEIVEGKGLINRVFETK 427
KK+K P K + S + K E R ALSM E +E + ++ F K
Sbjct: 4 KKVKYNPRKSASQNEATSASAGSKAFGFNSAKKEKLHRMALSM-EAIE--DVEDQSFNGK 60
Query: 428 MPQSSCAVSDREYLDHCIIERRQSLKLTKKPA 523
SS V R LD I E S + +KPA
Sbjct: 61 ---SSNLVRKRRGLDEDIDEFSSSSEDERKPA 89
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 271 KTISKQVENKSRYFEAIISSR 333
K++S Q+EN S F+AII R
Sbjct: 787 KSLSGQIENLSHEFDAIIKER 807
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,553
Number of Sequences: 5004
Number of extensions: 62249
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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