Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3o11
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 33 0.29
04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200 32 0.38
04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497 32 0.38
02_04_0286 - 21590114-21590365,21590441-21590566,21591091-215911... 32 0.50
07_01_1180 - 11188789-11188797,11189032-11189068,11190328-111903... 29 2.7
05_07_0289 + 29004842-29005213,29005318-29005605,29005707-290058... 29 3.5
07_03_0440 - 18215994-18216060,18216176-18216447 28 6.2
06_03_0491 - 21383036-21383161,21383246-21383439,21383627-213837... 28 6.2
>04_03_1049 + 22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +2
Query: 503 KLTKKPASTKLKGKSSKADTLTNSPKMDSADEVTKLKKAMYEWDAKHPKSMEPPGHSPAL 682
+L S L G +S+ADT + + + A +WDA S++P +P L
Sbjct: 1157 ELNPSAESYTLTGSASEADTKPREVSVAVVSSIMDIPSA--DWDACAVDSVDPDNFNPFL 1214
Query: 683 THCVL 697
TH L
Sbjct: 1215 THAFL 1219
>04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200
Length = 405
Score = 32.3 bits (70), Expect = 0.38
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +2
Query: 437 SSCAVSDREYLDHCIIERRQSLKLTKKPASTKLKGKSSKADTLTNSPKMDSADEVTKLKK 616
SSC ++ + RR+S T P S L S +A +L KMDS D +T+L
Sbjct: 28 SSCCLARPRASLESRLHRRKSFLYTSSPKSGFLIN-SCRARSLKVKAKMDSGDGLTRLAP 86
Query: 617 AMYE 628
M+E
Sbjct: 87 LMFE 90
>04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497
Length = 405
Score = 32.3 bits (70), Expect = 0.38
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +2
Query: 437 SSCAVSDREYLDHCIIERRQSLKLTKKPASTKLKGKSSKADTLTNSPKMDSADEVTKLKK 616
SSC ++ + RR+S T P S L S +A +L KMDS D +T+L
Sbjct: 28 SSCCLARPRASLESRLHRRKSFLYTSSPKSGFLIN-SCRARSLKVKAKMDSGDGLTRLAP 86
Query: 617 AMYE 628
M+E
Sbjct: 87 LMFE 90
>02_04_0286 -
21590114-21590365,21590441-21590566,21591091-21591198,
21591910-21591973,21592064-21592214,21592590-21592761,
21593164-21593394
Length = 367
Score = 31.9 bits (69), Expect = 0.50
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 392 GKGLINRVFETKMPQSSCAVSDREYLDHCIIE 487
G G+ +F K P S + +DREY+D I+E
Sbjct: 320 GMGVFKNMFRKKTPSDSSSHTDREYMDPDIVE 351
>07_01_1180 -
11188789-11188797,11189032-11189068,11190328-11190392,
11190464-11190562,11190707-11190878,11190973-11191325,
11191451-11191561,11191637-11191708,11192203-11192420,
11192546-11192594,11192697-11192750,11192876-11192958,
11193088-11193304,11193387-11193510,11194042-11194105,
11194413-11194500,11194623-11194724,11194842-11194937
Length = 670
Score = 29.5 bits (63), Expect = 2.7
Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 5/152 (3%)
Frame = +2
Query: 143 AQNVVFDFTPNEEDNAYTMNKCCDFWEAVGGCAELKKLKVLPE-KQSVNKSRISQDISKP 319
+ + D T ++ ++ + D ++ C E+ K ++L K +NK ++S D +
Sbjct: 7 SDEIFVDSTCSDSKSSENDDVISDSEDSKTSCDEISKEELLRSLKLKLNKKKVSVDCNLK 66
Query: 320 LLVHETVKSEVEGRSALSMLEIVEGKGLINRVFETKMPQSSCAVS---DREYLDHCIIER 490
ET + + + ++LEI LI+ ++ S V+ + +Y + +ER
Sbjct: 67 RKRSETADVDFKNQLDSALLEIFRDNVLIDLLYGLPKKLMSILVTSLFETKYSKNQSMER 126
Query: 491 RQSLKLTK-KPASTKLKGKSSKADTLTNSPKM 583
K +K S ++ GK D + KM
Sbjct: 127 NNDKKFSKFDKISKEVYGKRPIKDFSESCYKM 158
>05_07_0289 +
29004842-29005213,29005318-29005605,29005707-29005853,
29005939-29006175,29006261-29006524,29006609-29006725,
29006991-29007042,29007903-29008303,29008380-29008598,
29008692-29008925
Length = 776
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 141 RHSSPQPPPLKMLLWVVKLFMSGGSVSLVSKIFKSGSIFV 22
R P+PP L W + + G + LV+ +F G +FV
Sbjct: 689 RRRRPEPPVLVGRSWAWTMCVLGSVLWLVAAVFNMGKVFV 728
>07_03_0440 - 18215994-18216060,18216176-18216447
Length = 112
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 545 SSKADTLTNSPKMDSADEVTKLKKAMYEWDAKHPKSMEPPGHSPAL 682
+ KA+ + SP+ D + + EW+ P S +PP AL
Sbjct: 19 TKKAEAASRSPQQQQPDHDVEAMEPDAEWEILRPLSPDPPELEEAL 64
>06_03_0491 -
21383036-21383161,21383246-21383439,21383627-21383785,
21383904-21384029,21384290-21384492,21384691-21384818,
21385691-21385783
Length = 342
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 233 GCAELKKLKVLPEKQSVNKSRISQ-DISKPLLVHETVKSEVEGRSALSMLEIVEGKGLI 406
G L ++K +P+K+ + I + + +PL V+ R+ALSM+E E KGLI
Sbjct: 34 GWTPLIEMKNIPKKEGIQTRLIGKMETYQPLF-------SVKDRTALSMIEDAEEKGLI 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,813,656
Number of Sequences: 37544
Number of extensions: 420064
Number of successful extensions: 1166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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