Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3o11
(697 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 28 5.5
Z81581-6|CAB04666.1| 679|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z78200-8|CAB01583.2| 368|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z75546-8|CAC42331.2| 640|Caenorhabditis elegans Hypothetical pr... 28 7.3
U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical pr... 28 7.3
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 7.3
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr... 28 7.3
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr... 28 7.3
U37429-16|AAA79341.1| 597|Caenorhabditis elegans Protein kinase... 28 7.3
AF026521-1|AAB82588.1| 253|Caenorhabditis elegans histone H1.4 ... 28 7.3
AF025666-1|AAB88885.1| 597|Caenorhabditis elegans protein kinas... 28 7.3
Z49911-7|CAA90129.1| 861|Caenorhabditis elegans Hypothetical pr... 27 9.7
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +2
Query: 503 KLTKKPASTKLK---GKSSKADTLTNSPKMDSADEVTKLKKAMYEWDAKHPK 649
+LTK AS + GKS K + + PK+ S E + K + D K P+
Sbjct: 2986 ELTKSEASRNVSSSSGKSQKQADVQSRPKLQSVQEKRSVPKVVKPLDPKGPQ 3037
>Z81581-6|CAB04666.1| 679|Caenorhabditis elegans Hypothetical
protein T02E1.3b protein.
Length = 679
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +2
Query: 161 DFTPNEEDN-AYTMNKCCDFWEAVGGCA 241
+FT N E N A K CD W G C+
Sbjct: 58 NFTSNREHNPALRKTKICDHWRRSGSCS 85
>Z78200-8|CAB01583.2| 368|Caenorhabditis elegans Hypothetical
protein T04H1.6 protein.
Length = 368
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +2
Query: 5 KPFKY*TKMEPDLNILDTRDTEPPDINNLTTQSSIFSGGGCGEL---CLAQNVVFDFTPN 175
+P+ +EPD++ +D +TE P + +F GG G + + + P
Sbjct: 59 QPYPNIDVVEPDVDSVDIYETEEPQFK---VVNPVFPLGGSGIVEPGTIPPPMPQTQAPE 115
Query: 176 EEDNAYTMNKC 208
+ DN+Y +N C
Sbjct: 116 KPDNSYAINYC 126
>Z75546-8|CAC42331.2| 640|Caenorhabditis elegans Hypothetical
protein R05D11.9 protein.
Length = 640
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +2
Query: 149 NVVFDFTPNEEDNAYTMNKCCDFWEAVGGCAELKKLKVLPEKQSVNKSRISQDISKPLLV 328
N VF T E+D C + W+++ E+ P K S+ S +SQ +++ L
Sbjct: 80 NSVFFETVLEDDQL-----CTELWDSILHQCEVSTAPTEPAKDSILFSAVSQYVTRILPC 134
Query: 329 HETVKSEV 352
ET S +
Sbjct: 135 DETAPSSM 142
>U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical
protein C01G8.9b protein.
Length = 661
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 479 IIERRQSLKLTKKPASTKLKGKSSKADTLTNSPKMDSADEV-TKLKKAMYEWDAKHPKSM 655
II R L + + S+K G A+ L +PK SADE K K + E DA + +
Sbjct: 191 IIGRLLKLNVKEHKISSKRPGIVMSAEELKTAPKQLSADEKRAKEKSVLDEVDATTAQMV 250
Query: 656 E 658
E
Sbjct: 251 E 251
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 479 IIERRQSLKLTKKPASTKLKGKSSKADTLTNSPKMDSADEV-TKLKKAMYEWDAKHPKSM 655
II R L + + S+K G A+ L +PK SADE K K + E DA + +
Sbjct: 1254 IIGRLLKLNVKEHKISSKRPGIVMSAEELKTAPKQLSADEKRAKEKSVLDEVDATTAQMV 1313
Query: 656 E 658
E
Sbjct: 1314 E 1314
>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical
protein T23F2.2b protein.
Length = 1538
Score = 27.9 bits (59), Expect = 7.3
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Frame = +2
Query: 239 AELKK--LKVLPEKQSVNK--SRISQDISKPLLVHETVKSEVEGRSALSMLEIVEGKGLI 406
A+LKK + L E+ +K S + + + + +ET + EG+ + E +E + L
Sbjct: 207 AQLKKELRQALSERDEKDKHLSDLRDKVKEIEIFNETQNTLAEGQKMMRK-EQIEKEALE 265
Query: 407 NRVFETKMPQSSCAVSDREYLDHCIIERRQSLKLTKKPASTKLKGKSSKADTLTNSPKMD 586
E K+ + AV + + + R +++KLT + A+ + + K+D T + +++
Sbjct: 266 K---EKKLLEKKHAVRVNQLIQETMTAREEAVKLTSRVANLEEQLNPPKSDCETQTDEIE 322
>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical
protein T23F2.2a protein.
Length = 1534
Score = 27.9 bits (59), Expect = 7.3
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Frame = +2
Query: 239 AELKK--LKVLPEKQSVNK--SRISQDISKPLLVHETVKSEVEGRSALSMLEIVEGKGLI 406
A+LKK + L E+ +K S + + + + +ET + EG+ + E +E + L
Sbjct: 207 AQLKKELRQALSERDEKDKHLSDLRDKVKEIEIFNETQNTLAEGQKMMRK-EQIEKEALE 265
Query: 407 NRVFETKMPQSSCAVSDREYLDHCIIERRQSLKLTKKPASTKLKGKSSKADTLTNSPKMD 586
E K+ + AV + + + R +++KLT + A+ + + K+D T + +++
Sbjct: 266 K---EKKLLEKKHAVRVNQLIQETMTAREEAVKLTSRVANLEEQLNPPKSDCETQTDEIE 322
>U37429-16|AAA79341.1| 597|Caenorhabditis elegans Protein kinase c
protein 3 protein.
Length = 597
Score = 27.9 bits (59), Expect = 7.3
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +2
Query: 461 EYLDHCIIERRQSL-KLTKKPASTKLKGKSSKADTLTNSPKMDSADEVTKLKKAMY---- 625
+YL I+ER+ + + AS LKG +K T K+D + + +K+ +
Sbjct: 466 DYLFQIILERQIRIPRSLSVRASGILKGFLNKDPTERLGCKLDINEGLRDMKEHQFFRGF 525
Query: 626 -EWDAKHPKSMEPPGHSPAL 682
+W+A K++ PP H PA+
Sbjct: 526 IDWEALEQKAVAPPYH-PAV 544
>AF026521-1|AAB82588.1| 253|Caenorhabditis elegans histone H1.4
protein.
Length = 253
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 509 TKKPASTKLKGKSSKADTLTNSPKMDSADEVTKLKKAMYEWDAKHP 646
T+ PA+ K++KA T +PK A + TK+ M + DA HP
Sbjct: 11 TETPAAPTKASKATKASKATKAPKATKA-KTTKVP--MVKADAAHP 53
>AF025666-1|AAB88885.1| 597|Caenorhabditis elegans protein kinase
C3 protein.
Length = 597
Score = 27.9 bits (59), Expect = 7.3
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +2
Query: 461 EYLDHCIIERRQSL-KLTKKPASTKLKGKSSKADTLTNSPKMDSADEVTKLKKAMY---- 625
+YL I+ER+ + + AS LKG +K T K+D + + +K+ +
Sbjct: 466 DYLFQIILERQIRIPRSLSVRASGILKGFLNKDPTERLGCKLDINEGLRDMKEHQFFRGF 525
Query: 626 -EWDAKHPKSMEPPGHSPAL 682
+W+A K++ PP H PA+
Sbjct: 526 IDWEALEQKAVAPPYH-PAV 544
>Z49911-7|CAA90129.1| 861|Caenorhabditis elegans Hypothetical
protein M28.9 protein.
Length = 861
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 500 LKLTKKPASTKLKGKSSKADTLTNSPKMDSADEVTKLKKA 619
LK LKG S+ ADT+ S ++DS +++ + KA
Sbjct: 283 LKARVSAMGIALKGLSTAADTVMGSSELDSVNKMVDVIKA 322
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,573,999
Number of Sequences: 27780
Number of extensions: 352122
Number of successful extensions: 1017
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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