Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o11
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   4.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = +2

Query: 452 SDREYLDHCIIERRQSLKLTKKPASTKLKGKSSKADTLTNSP 577
           ++R+Y D C+++   +      P +TK  G     + L   P
Sbjct: 600 NERKYEDVCVLKTDTNQSCPSPPVTTKRDGTQETEERLPPLP 641


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 639 LASHSYMAFFSLVTSSALSILGELVRVSALEDFPFSFVLAGFF 511
           +A   Y      ++   LSI G L+R+ A+  F   + +A  F
Sbjct: 146 IAFDRYNVIVKGLSGKPLSINGALIRIIAIWLFSLGWTIAPMF 188


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 530  KLKGKSSKADTLTNSPKMDSADEVTKL 610
            KL     KAD + N+P MD+  +  KL
Sbjct: 1387 KLNEYLDKADVIVNTPIMDAHFKDVKL 1413


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 639 LASHSYMAFFSLVTSSALSILGELVRVSALEDFPFSFVLAGFF 511
           +A   Y      ++   LSI G L+R+ A+  F   + +A  F
Sbjct: 22  IAFDRYNVIVKGLSGKPLSINGALIRIIAIWLFSLGWTIAPMF 64


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 173 NEEDNAYTMNKCCD 214
           + E+N  TMNKC D
Sbjct: 870 SHENNQPTMNKCSD 883


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 296 ISQDISKPLLVHETVKSEVEGRSALSMLEI 385
           +  DI KP++  ETV   +E     S L +
Sbjct: 162 LQYDIGKPVVAEETVDYMLEKSGNFSRLVV 191


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 482 IERRQSLKLTKKPASTKLKGKSSKADTLTNSPKM 583
           ++  +  K   + A +   G  SK+ TLT+SP M
Sbjct: 575 VDEVEFYKRRPQRACSTTGGVPSKSPTLTHSPTM 608


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,878
Number of Sequences: 438
Number of extensions: 4178
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)