Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o09
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0123 + 896128-896429,896578-896608,896903-896995,897096-89...    30   1.7  
03_03_0099 + 14400651-14400936,14403705-14403731,14403956-144042...    28   6.9  
01_07_0330 - 42788802-42788891,42789224-42789274,42789365-427893...    28   9.1  

>02_01_0123 +
           896128-896429,896578-896608,896903-896995,897096-897158,
           897279-897390,897947-898032,898845-898903,898990-899092,
           899182-899242,899472-899554,899635-899715,900018-900077
          Length = 377

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
 Frame = -3

Query: 663 VSKPFNSEN*PSL---ITCVTRDIACLVPYLKSFSSNVGSHTF---LNTLKSILIINHLI 502
           V   + S+  PSL   I C TRD++ +  Y++ F+S+V +  F   L+TL+S L    L+
Sbjct: 199 VEDRWKSDEPPSLYIFINCSTRDLSTIEKYVEQFASSVPALLFNLELDTLRSDL---GLL 255

Query: 501 GF 496
           GF
Sbjct: 256 GF 257


>03_03_0099 +
           14400651-14400936,14403705-14403731,14403956-14404236,
           14404423-14404512,14405660-14406100
          Length = 374

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 24/83 (28%), Positives = 37/83 (44%)
 Frame = +2

Query: 461 NIKRVPKLILLQNPIKWLMIKIDFSVLRNVWDPTFEEKDFKYGTKQAISRVTQVISDGQF 640
           +I  +P + LL   I WL    D++V+R +W P    K+F+   KQ I         G  
Sbjct: 3   SILLLPLVALLVVAISWLW---DYTVVRLIWRPHCIAKEFR--EKQGIRGPAYKFLGGNN 57

Query: 641 SELNGLLTKAARLSLLRELDRNW 709
            E++ L  +A    L    D N+
Sbjct: 58  GEISRLKEEADGQVLDNLRDHNY 80


>01_07_0330 -
           42788802-42788891,42789224-42789274,42789365-42789397,
           42789501-42789614,42789757-42789849,42789934-42790029,
           42790255-42790359,42790453-42790768,42790955-42791010,
           42791131-42791399,42791616-42791658
          Length = 421

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 603 YHGLHKL*AMVSSQN*TVCLRKQLD*VYCVNW 698
           Y G H+L   VSS N  VC  K+LD VY   W
Sbjct: 291 YLGFHEL---VSSMNYDVCFFKELDGVYFEIW 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,392,128
Number of Sequences: 37544
Number of extensions: 203219
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)