Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o08
         (782 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           25   0.68 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   1.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.6  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    24   1.6  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   4.8  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 494 FAYDVGDIPQTXLYGVLSHVPXEASQISGEVT 399
           FA  +G   Q  +Y V+ H P ++  +SG +T
Sbjct: 8   FAMTLGQ--QNKMYNVIQHSPQQSIIVSGSIT 37


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 288 PDHXTAPPTDPKFPP 244
           P H +    DPKFPP
Sbjct: 19  PQHISGVVVDPKFPP 33


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 288 PDHXTAPPTDPKFPP 244
           P H +    DPKFPP
Sbjct: 19  PQHISGVVVDPKFPP 33


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 288 PDHXTAPPTDPKFPP 244
           P H +    DPKFPP
Sbjct: 19  PQHISGVVVDPKFPP 33


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 288 PDHXTAPPTDPKFPP 244
           P H +    DPKFPP
Sbjct: 19  PQHISGVVVDPKFPP 33


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -3

Query: 438 CPXGSESNKWGGHCYWP 388
           CP G   N   G C WP
Sbjct: 138 CPNGLVYNDKAGICSWP 154


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,474
Number of Sequences: 336
Number of extensions: 3275
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)