Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o08
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...   110   3e-25
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    30   0.43 
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    29   0.75 
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    27   3.0  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   7.0  

>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score =  110 bits (264), Expect = 3e-25
 Identities = 52/224 (23%), Positives = 116/224 (51%), Gaps = 4/224 (1%)
 Frame = +3

Query: 120 TEYWVISAPG-DKTCQQTWDTLNXATXSGN---LXVXYKFPIPDLKVGTLDQLVGLSXDL 287
           +++W++S P    +     D +     SG+   +     F +P  KV +LD L+  S  L
Sbjct: 4   SDFWILSVPSRGGSNADLCDDIERLLVSGSTSLISTVAPFDVPPFKVESLDVLISQSEQL 63

Query: 288 GKLDTFVXGVTXKVAQYLGEVLEDHRDKLHENLMANNSDLPTYLTRFXWDMAKYPIKXSL 467
            K D        K++  +   +      L +  M  +     Y++ F W+ +++ +  ++
Sbjct: 64  TKQDAQCASAISKISDIIKNTVSSSSGDLKDYFMVQDKSPLEYVSSFAWNSSRFHMNKTI 123

Query: 468 RNIADIISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILD 647
             I+D I+ ++   + D++ + +++        N++KKQ+G+L  ++LA++V +E  +  
Sbjct: 124 SEISDRITSEIISFENDIRTRQTSFQQASSAFQNMQKKQSGNLSQKSLANIVHEEDVVHG 183

Query: 648 SEYLTTLLVIVPKSMFNDWNANYEKITDMIVPRSTQLVHQDNDY 779
           S+YLT + + VP ++   +  +YE +TD+++PRS + + QD+++
Sbjct: 184 SDYLTNVFIAVPLNLEKQFLNSYETLTDLVIPRSAKKLDQDSEF 227


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
 Frame = +3

Query: 534 SAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWNAN 713
           S ++ L  + H +E K         L  L    + +   +Y   LL I  K   ND+ A 
Sbjct: 194 SKFSKLGPSEHEIEVKHFAKEFESILRYLYLDTNAVFTKQYNNALLSIGKKFQLNDFIAL 253

Query: 714 YEKITDMIVPR---STQLVHQDNDYG 782
           YEK  + +  R     QL    ND G
Sbjct: 254 YEKDREQLHSRDWKKIQLAKTQNDLG 279


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 456 KXSLRNIADIISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKE 632
           K   +NIA +    V +I  D  V+    N +KG    L  K+   +   NL D+ K+E
Sbjct: 218 KNKQQNIAGVQGTMVTKIGYDELVRQGDSNLMKGTGTKLNGKEVAEVPKINLLDVEKQE 276


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = +2

Query: 533 LRLQRSQRKPTQFR-EETDRELVD--PQL-GRSSQEGALHLGQRVPDHTPGHRAQVNVQR 700
           LRL  S  +   FR ++T RE+    PQ+ G +++  A HLG+R  +  P   A      
Sbjct: 17  LRLLPSTEEFDDFRRQDTGREVYSQIPQIEGSTAKRDAEHLGKRHREFLPRVTAYCTCDT 76

Query: 701 LECQLREDNGHDRAALHPARP 763
               L       R + H  RP
Sbjct: 77  FRVDLLFKFFQSRRSSHKTRP 97


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 766 WWTSWVERGTIMSVIFS*LAFQSLNIDLGTMTRSVVRYSLSKMKCSF 626
           W  S   RGT  ++  +  +  ++ +DL T T++ V Y+   ++ SF
Sbjct: 220 WLASKTARGTSCALSSAVASNLAIGLDLVTATQNAVSYTQRALEMSF 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,478
Number of Sequences: 5004
Number of extensions: 54857
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)