Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3o08
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272... 166 2e-41
09_02_0213 - 5842150-5842261,5842729-5842925 31 1.0
06_01_0073 + 599296-599423,599803-599859,600418-600697 29 4.2
11_01_0809 + 7201431-7202243,7202646-7203347,7216678-7216755 29 5.5
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638... 29 5.5
12_02_0417 - 18896949-18897269,18897340-18897424,18899561-188996... 28 7.3
07_03_0482 + 18589573-18589728,18589889-18590065,18590518-185906... 28 7.3
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954... 28 7.3
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 28 9.6
08_01_0788 + 7617929-7617969,7619848-7621622,7635250-7635437 28 9.6
07_01_0769 + 5908942-5908946,5909085-5909666,5910370-5910429,591... 28 9.6
05_03_0463 + 14334409-14334568,14334736-14334911,14335274-143353... 28 9.6
>05_07_0331 -
29324967-29326256,29326919-29327020,29327226-29327278,
29327628-29327674,29327762-29327841,29327933-29328016,
29328383-29328433,29328925-29329050,29329231-29329347,
29329710-29329851,29329986-29330053,29330509-29330608,
29330713-29330840,29330929-29330997,29331083-29331205
Length = 859
Score = 166 bits (404), Expect = 2e-41
Identities = 87/224 (38%), Positives = 129/224 (57%), Gaps = 4/224 (1%)
Frame = +3
Query: 120 TEYWVISAPGD---KTCQQTWDTLNXATXSGNLXVX-YKFPIPDLKVGTLDQLVGLSXDL 287
T YW++S P T W L + + Y+F +PDL+VGTLD L+ LS DL
Sbjct: 3 TRYWIVSLPVQTPGSTANSLWARLQDSISRHSFDTPLYRFNVPDLRVGTLDSLLALSDDL 62
Query: 288 GKLDTFVXGVTXKVAQYLGEVLEDHRDKLHENLMANNSDLPTYLTRFXWDMAKYPIKXSL 467
K + F+ GV+ K+ + + E LE L + + TYLTRF WD KYP L
Sbjct: 63 VKSNVFIEGVSHKIRRQIEE-LERAGGVESGALTVDGVPVDTYLTRFVWDEGKYPTMSPL 121
Query: 468 RNIADIISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILD 647
+ I I QV +I+ D+KV+ + YN ++ L + +KQTGSL R+L++LVK E +
Sbjct: 122 KEIVGSIQSQVSKIEDDMKVRGAEYNNVRSQLSAINRKQTGSLAVRDLSNLVKPEDMV-T 180
Query: 648 SEYLTTLLVIVPKSMFNDWNANYEKITDMIVPRSTQLVHQDNDY 779
SE+L TLL +VPK DW ++YE + +VPRS++ +++DN+Y
Sbjct: 181 SEHLVTLLAVVPKYSQKDWLSSYESLDTFVVPRSSKKLYEDNEY 224
>09_02_0213 - 5842150-5842261,5842729-5842925
Length = 102
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +2
Query: 404 PPHLFDSLPMGHG*VPHKAXSAEYRRHHKQTGRTDRRGSEGQVLRLQRSQRKPTQFREET 583
P H +L H VPH A+ R H +Q ++RG EG+ + ++K + T
Sbjct: 13 PRHAVQTLLCRHAAVPHVGRRAQ-RAHRRQPTTRNQRGKEGKWKNKRGKKKKRGKMSGIT 71
Query: 584 DRE 592
++E
Sbjct: 72 NKE 74
>06_01_0073 + 599296-599423,599803-599859,600418-600697
Length = 154
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 611 GRSSQEGALHLGQRVPDHTPGHRAQVNVQRLECQLREDN-GHDRAALHPARPPGQR 775
G S + HL PG+ + + RL C++ ED+ DRA RP GQR
Sbjct: 23 GGDSSLPSSHLIVLCSSRQPGNFIERDELRLRCEITEDDMPADRARRERMRPGGQR 78
>11_01_0809 + 7201431-7202243,7202646-7203347,7216678-7216755
Length = 530
Score = 28.7 bits (61), Expect = 5.5
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +3
Query: 273 LSXDLGKL--DTFVXGVTXKVAQYLGEVLEDHRDKLHENLMANNSDLPTYLTRFXWDMAK 446
++ DLG++ D + K A L ++LEDHR L+ + L T L W AK
Sbjct: 116 VADDLGQMLQDAREDCESEKEAHKLDKMLEDHRTSLYPGCEQGHKKLDTTLELLQW-KAK 174
Query: 447 YPIKXSLRNIADIISKQVGQIDADLKVKSSAYNALK 554
+ S + D++ + + K+ + Y A K
Sbjct: 175 NGV--SDKAFGDLLKRIKNILPGGNKLPETTYEAKK 208
>01_07_0353 +
42962769-42962972,42963062-42963138,42963571-42963817,
42963907-42964476,42964998-42965171,42965514-42965640,
42965719-42965828,42966707-42966907,42966999-42967966,
42968110-42968358,42968760-42969105
Length = 1090
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 511 SICPTCLLMMSAIFRRLC 458
S+CP CL ++S F+RLC
Sbjct: 199 SVCPNCLPLISKHFQRLC 216
>12_02_0417 -
18896949-18897269,18897340-18897424,18899561-18899656,
18900418-18900476,18901285-18901359
Length = 211
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 191 GXVQGIPSLLTGLVARGTDH 132
G V GIP LL G + RG DH
Sbjct: 161 GVVNGIPQLLQGEMHRGADH 180
>07_03_0482 +
18589573-18589728,18589889-18590065,18590518-18590688,
18590913-18591029,18591614-18591742,18592210-18592311,
18592412-18592498,18592585-18592638,18594880-18595016,
18595181-18595235,18596133-18596188,18596275-18596334,
18596442-18596529,18596634-18597371,18597451-18597511,
18598301-18598403,18599180-18599311,18599393-18599477
Length = 835
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 187 MPPXQATSXSTINSLFLTLRWELWISWWGCXMIW 288
M Q + ++ LFL ++ SWW C M W
Sbjct: 300 MDELQEKALVSLAKLFLEFKYAPTPSWWDCTMYW 333
>05_03_0460 -
14294931-14295110,14295200-14295234,14295358-14295457,
14295548-14295669,14296272-14296367,14296489-14298949
Length = 997
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = -1
Query: 479 GDIPQTXLYGVLSHVPXEASQISGEVTVIGHQVFMELIAVIFKYLSKVLGYLXGHTXDES 300
G P Y ++ V + +I ++ + V+ E + Y S + G+ DE+
Sbjct: 645 GLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEA 704
Query: 299 VKL 291
+KL
Sbjct: 705 IKL 707
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 27.9 bits (59), Expect = 9.6
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +2
Query: 485 HKQTGRTDRRGSEGQVLRLQRSQR-KPTQFREETD---RELVDPQLGRSSQEGALHLGQR 652
HK R+ RG + + R QRS+ K FREE + +E ++ QL +E + +
Sbjct: 386 HKHRSRSRERGRDAE-RRGQRSEELKENTFREEDEEEYQEKIEQQLAMQEEEDPEKIKEE 444
Query: 653 VPDHTPGHRAQVNVQRLECQLRE 721
A+ Q+L+ Q E
Sbjct: 445 ARRRKEAIMAKYRQQQLQKQQLE 467
>08_01_0788 + 7617929-7617969,7619848-7621622,7635250-7635437
Length = 667
Score = 27.9 bits (59), Expect = 9.6
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +3
Query: 273 LSXDLGKL--DTFVXGVTXKVAQYLGEVLEDHRDKLHENLMANNSDLPTYLTRFXWDMAK 446
++ DLG++ D+ + K A L ++LEDHR L+ + L T L W AK
Sbjct: 130 VADDLGQMLQDSREDCESEKEAHKLDKMLEDHRTSLYPGCEQGHKKLDTTLELLQW-KAK 188
Query: 447 YPIKXSLRNIADIISKQVGQIDADLKVKSSAYNALK 554
+ S + D++ + K+ + Y A K
Sbjct: 189 NGV--SDKAFGDLLKLVKNILPGGNKLPETTYEAKK 222
>07_01_0769 +
5908942-5908946,5909085-5909666,5910370-5910429,
5910635-5910674,5910767-5910860,5911582-5911952
Length = 383
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Frame = +2
Query: 488 KQTGRTDRRGSEGQVLRLQRSQRKPTQFREETDRELVDPQLGRSSQEGALHLGQRVPDHT 667
++ G RR GQ QR Q + Q +E E + + QEG++ Q
Sbjct: 63 EERGEKRRRVGHGQQRSHQRDQERSHQHDQERSVERDQERSHQRDQEGSVERDQERSHQR 122
Query: 668 PGHRAQVNVQR--LECQLREDNGHDR 739
HR+ Q +EC + D+
Sbjct: 123 DRHRSVKRDQHRSVECDQQRSRQRDQ 148
>05_03_0463 +
14334409-14334568,14334736-14334911,14335274-14335357,
14335374-14335685
Length = 243
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 594 LLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWN 707
L T N+ D+++K H D ++ + PKS DW+
Sbjct: 94 LRTCNIMDVMEKNHGGYDQTFIKAMGGKCPKSFITDWD 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,408,329
Number of Sequences: 37544
Number of extensions: 392841
Number of successful extensions: 1020
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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