Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o08
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.)             102   4e-22
SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16)                   31   0.80 
SB_34087| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2)                       28   7.4  
SB_48550| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_552| Best HMM Match : Laminin_EGF (HMM E-Value=1.3e-23)             28   7.4  
SB_1022| Best HMM Match : EspF (HMM E-Value=0.51)                      28   9.8  
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)          28   9.8  
SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.8  

>SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  102 bits (244), Expect = 4e-22
 Identities = 65/157 (41%), Positives = 86/157 (54%)
 Frame = +3

Query: 117 MTEYWVISAPGDKTCQQTWDTLNXATXSGNLXVXYKFPIPDLKVGTLDQLVGLSXDLGKL 296
           M EYW++SAPG+KT QQT++ L        +   YKFPIP+LKVGTLD LVGLS DL K+
Sbjct: 1   MAEYWLVSAPGEKTQQQTYEALKSRMVG--MSPVYKFPIPELKVGTLDTLVGLSDDLNKV 58

Query: 297 DTFVXGVTXKVAQYLGEVLEDHRDKLHENLMANNSDLPTYLTRFXWDMAKYPIKXSLRNI 476
           D+FV              L +H  +   N   +++   TY +    +    P   S    
Sbjct: 59  DSFVESSVD---------LSNHAAQNDYNEHFDHNGFETYHSEDEDEDGSEPPSSS---- 105

Query: 477 ADIISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQT 587
              I  QV QI+ DLK KS+AYN +KG L +LE+K T
Sbjct: 106 ---ILTQVSQIEHDLKTKSAAYNNIKGTLASLERKST 139


>SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16)
          Length = 339

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = +2

Query: 614 RSSQEGALHLGQRVPDHTPGHRAQVNVQRLECQLREDNGHDRAALHPARP 763
           RSSQ G    GQ  PD TP  R      R+   L E   H     + A P
Sbjct: 159 RSSQSGGQTNGQTTPDSTPSKRKTDRPTRVRTVLNEKQLHTLRTCYNANP 208


>SB_34087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 27/120 (22%), Positives = 55/120 (45%)
 Frame = +3

Query: 135 ISAPGDKTCQQTWDTLNXATXSGNLXVXYKFPIPDLKVGTLDQLVGLSXDLGKLDTFVXG 314
           ++AP +K+C   +D++  A   G +   Y+   P+L++ +L   + +   L   +  +  
Sbjct: 453 LAAPLEKSCTDLYDSIVSAALVGRVTTLYR-TRPELEIVSLFCSI-IDRCLATAEQVLAA 510

Query: 315 VTXKVAQYLGEVLEDHRDKLHENLMANNSDLPTYLTRFXWDMAKYPIKXSLRNIADIISK 494
           V  + AQ++ +       +LH    AN   L  +L  F  D  K  +    +++AD+  K
Sbjct: 511 VNQRHAQWINK-------ELHSRQRANYKRLRAHLP-FIRDTLKLTVGVVAQHLADLTLK 562


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 470  EYRRHHKQTGRTDRRGSEGQVLRLQRSQRKPTQFREETD 586
            E  R +KQ+GR +R    G+  + +R QR+  + RE  D
Sbjct: 1037 EKERPYKQSGRGERNDRRGERYQDRREQREREEDREPRD 1075


>SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2)
          Length = 760

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +3

Query: 486 ISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLTT 665
           + KQV ++ + LKV+S  +  +K    +L+K     +L R+  DL  K   I D +    
Sbjct: 87  LEKQVAELHSQLKVESEGHAKVKKAHGDLQKSY--MVLERSYGDLQDKNRIIGDQKVRVV 144

Query: 666 L 668
           L
Sbjct: 145 L 145


>SB_48550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
 Frame = +2

Query: 497 GRTDRRGSEGQVLRLQRSQRKPTQFREETDRELVDPQLGRSSQEGALHLGQRVPDHTP-- 670
           GR  R  ++ +V+   +      Q RE TDR ++D Q   ++   +   G++   HT   
Sbjct: 445 GRQARENTDRRVMG-NKLASNGKQAREHTDRRVMDIQARENTDRRSASNGKQARKHTDRR 503

Query: 671 --GHRAQVNVQRLECQLREDNGHDRAAL 748
             G +A+ N  R     +     DR A+
Sbjct: 504 AMGIQARENTDRRSVSRQARKNTDRRAM 531


>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 398 Q*PPHLFDSLPMGHG*VP-HKAXSAEYRRHHKQTGRTDRRGSEGQ 529
           Q P    +SLP+G G +P  K+  A   +   QTG TD+ GS GQ
Sbjct: 501 QQPKEEKESLPVG-GIIPIPKSALATRDKAGSQTGSTDQTGSHGQ 544


>SB_552| Best HMM Match : Laminin_EGF (HMM E-Value=1.3e-23)
          Length = 198

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 324 SWSHLXRKCQACPDHXTAPPTDP 256
           S SH  R+C+ C D     PTDP
Sbjct: 48  SESHAGRQCERCQDGYYGTPTDP 70


>SB_1022| Best HMM Match : EspF (HMM E-Value=0.51)
          Length = 310

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 560 PTQFREETDRELVDPQLGRSSQEGALHLGQRVPDHTPGHRAQVNVQR 700
           P   R+      + PQL R+   G     Q + DH  GHRA + V R
Sbjct: 201 PQVIRDHLAGHRIPPQLIRAQLAGHRIPPQVIRDHLAGHRAPLQVIR 247


>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
          Length = 421

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = -3

Query: 375 GAYRGDLQVPLQGTGLPSWSHLXRKCQACPDHXTAPPTD--PKFPP*G 238
           G Y     VP +G G+P  +H      A P    APP    P  PP G
Sbjct: 202 GGYAPPPYVPQEGGGIPPQNHPLTNYPAPPPQGYAPPPGGYPGAPPAG 249


>SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 22/87 (25%), Positives = 34/87 (39%)
 Frame = +2

Query: 476 RRHHKQTGRTDRRGSEGQVLRLQRSQRKPTQFREETDRELVDPQLGRSSQEGALHLGQRV 655
           R+  +Q  R   R  + Q  R ++ QR+  + R+   +     Q  R  Q   L   QR+
Sbjct: 37  RQRQRQRQRQRHRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRLRQRQRL 96

Query: 656 PDHTPGHRAQVNVQRLECQLREDNGHD 736
                  + Q N    +   R DN HD
Sbjct: 97  RQRQRQRQQQRNDNDNDNDNRNDNDHD 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,084,052
Number of Sequences: 59808
Number of extensions: 443805
Number of successful extensions: 1279
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)