Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3o08
(782 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024762-2|AAF59474.3| 384|Caenorhabditis elegans Vacuolar h at... 241 4e-64
AB009567-1|BAA75067.1| 384|Caenorhabditis elegans Vha11 protein... 241 4e-64
AC024762-3|AAO91689.2| 133|Caenorhabditis elegans Vacuolar h at... 104 8e-23
Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z81575-7|CAB04638.1| 367|Caenorhabditis elegans Hypothetical pr... 28 8.7
AL117204-6|CAB55149.2| 833|Caenorhabditis elegans Hypothetical ... 28 8.7
>AC024762-2|AAF59474.3| 384|Caenorhabditis elegans Vacuolar h
atpase protein 11, isoforma protein.
Length = 384
Score = 241 bits (590), Expect = 4e-64
Identities = 112/219 (51%), Positives = 154/219 (70%)
Frame = +3
Query: 123 EYWVISAPGDKTCQQTWDTLNXATXSGNLXVXYKFPIPDLKVGTLDQLVGLSXDLGKLDT 302
EYW+IS PG+K WD LN +T GN K+ IPDLKVGTLDQLVGLS DL KLDT
Sbjct: 8 EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDT 65
Query: 303 FVXGVTXKVAQYLGEVLEDHRDKLHENLMANNSDLPTYLTRFXWDMAKYPIKXSLRNIAD 482
V K+ QY EVLE+ + K+ ENL+ N D+ TY+T+F W+ AKYP+K SL+ +++
Sbjct: 66 SAEAVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYPLKQSLKVLSE 125
Query: 483 IISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLT 662
II KQ+ QID DLKVKS YN LK L ++++K GSLLT++LADLVK + F+L+SEYL
Sbjct: 126 IIGKQISQIDNDLKVKSLTYNNLKNALASMDRKTVGSLLTKDLADLVKADDFVLNSEYLQ 185
Query: 663 TLLVIVPKSMFNDWNANYEKITDMIVPRSTQLVHQDNDY 779
T++V+VPK +W Y ++ M+VP S++L+ ++ ++
Sbjct: 186 TVIVVVPKISVKEWEQKYATLSSMVVPGSSKLLTEEGEH 224
>AB009567-1|BAA75067.1| 384|Caenorhabditis elegans Vha11 protein
protein.
Length = 384
Score = 241 bits (590), Expect = 4e-64
Identities = 112/219 (51%), Positives = 154/219 (70%)
Frame = +3
Query: 123 EYWVISAPGDKTCQQTWDTLNXATXSGNLXVXYKFPIPDLKVGTLDQLVGLSXDLGKLDT 302
EYW+IS PG+K WD LN +T GN K+ IPDLKVGTLDQLVGLS DL KLDT
Sbjct: 8 EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDT 65
Query: 303 FVXGVTXKVAQYLGEVLEDHRDKLHENLMANNSDLPTYLTRFXWDMAKYPIKXSLRNIAD 482
V K+ QY EVLE+ + K+ ENL+ N D+ TY+T+F W+ AKYP+K SL+ +++
Sbjct: 66 SAEAVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYPLKQSLKVLSE 125
Query: 483 IISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLT 662
II KQ+ QID DLKVKS YN LK L ++++K GSLLT++LADLVK + F+L+SEYL
Sbjct: 126 IIGKQISQIDNDLKVKSLTYNNLKNALASMDRKTVGSLLTKDLADLVKADDFVLNSEYLQ 185
Query: 663 TLLVIVPKSMFNDWNANYEKITDMIVPRSTQLVHQDNDY 779
T++V+VPK +W Y ++ M+VP S++L+ ++ ++
Sbjct: 186 TVIVVVPKISVKEWEQKYATLSSMVVPGSSKLLTEEGEH 224
>AC024762-3|AAO91689.2| 133|Caenorhabditis elegans Vacuolar h
atpase protein 11, isoformb protein.
Length = 133
Score = 104 bits (249), Expect = 8e-23
Identities = 51/92 (55%), Positives = 60/92 (65%)
Frame = +3
Query: 123 EYWVISAPGDKTCQQTWDTLNXATXSGNLXVXYKFPIPDLKVGTLDQLVGLSXDLGKLDT 302
EYW+IS PG+K WD LN +T GN K+ IPDLKVGTLDQLVGLS DL KLDT
Sbjct: 8 EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDT 65
Query: 303 FVXGVTXKVAQYLGEVLEDHRDKLHENLMANN 398
V K+ QY EVLE+ + K+ ENL+ N
Sbjct: 66 SAEAVIRKLVQYFTEVLEEDKSKIAENLVIGN 97
>Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical
protein T05E11.3 protein.
Length = 760
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 573 EKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWNANYEKITDMI 737
E KQ +T++ + + HF + E ++ VPK ND NY K+ + I
Sbjct: 333 EYKQFYKSITKDSEEPLSHVHFSAEGEVSFRSILYVPKKSPNDMFQNYGKVIENI 387
>Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical
protein M04C3.2 protein.
Length = 606
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Frame = +3
Query: 552 KGNLHNLEKKQT-GSLLTRNLADLVKKE---HFILDS-----EY---LTTLLVIVPKSMF 695
K NL EK+ G ++T + D++ KE F+LD EY + L++VP M
Sbjct: 234 KSNLAQREKEPVRGGIITTLIRDILIKETIIEFLLDQKNTSEEYGHSMGKTLLVVPPDMI 293
Query: 696 NDWNANYEKITD 731
W EK+ +
Sbjct: 294 ESWKKLLEKLLE 305
>Z81575-7|CAB04638.1| 367|Caenorhabditis elegans Hypothetical
protein R08H2.8 protein.
Length = 367
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 246 VGTLDQLVGLSXDLGKLDTFVXGVT 320
VG D + GL GKL+ F+ GVT
Sbjct: 161 VGQYDYITGLEGSSGKLNVFMGGVT 185
>AL117204-6|CAB55149.2| 833|Caenorhabditis elegans Hypothetical
protein Y116A8C.13 protein.
Length = 833
Score = 27.9 bits (59), Expect = 8.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 669 LVIVPKSMFNDWNANYEK 722
L+IVP S+ N+W A ++K
Sbjct: 270 LIIVPSSLVNNWKAEFDK 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,009,756
Number of Sequences: 27780
Number of extensions: 318546
Number of successful extensions: 960
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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