Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o08
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   3.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   7.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.8  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 171 KSADRSCRQGH*SPSI-QSFSPLIN*SNNHDPLINNQCSKKIPIFLNRVQQ*AIKLSI 1
           +S DR  R+    P I  S S   N SNN+    NN   KK+   +N ++Q  I + +
Sbjct: 288 RSRDRRERERSKEPKIISSLSNSCNYSNNY---YNNNNYKKLYYNINYIEQIPIPVPV 342


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 408 GGHCYWP 388
           GG CYWP
Sbjct: 139 GGSCYWP 145


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 140 CPWRQDLSADLGY 178
           CPW  +L+ D GY
Sbjct: 235 CPWICELTNDAGY 247


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/50 (22%), Positives = 22/50 (44%)
 Frame = +2

Query: 479 RHHKQTGRTDRRGSEGQVLRLQRSQRKPTQFREETDRELVDPQLGRSSQE 628
           R+HK         +E Q   +++ + +  + RE +DR     Q  +  Q+
Sbjct: 49  RNHKSIYHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQ 98


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 333 QYLGEVLEDHRDKLHENLMAN 395
           QYL E+   HRD    N++ N
Sbjct: 749 QYLAEMNYVHRDLAARNVLVN 769


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,464
Number of Sequences: 438
Number of extensions: 3978
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)