Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o08
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12840.1 68414.m01491 vacuolar ATP synthase subunit C (VATC) ...   176   1e-44
At1g14390.1 68414.m01706 leucine-rich repeat transmembrane prote...    31   0.86 
At5g50440.1 68418.m06246 Golgi SNARE protein membrin 12 (MEMB12)...    29   2.6  
At5g63720.1 68418.m07998 hypothetical protein                          29   3.5  
At4g13985.1 68417.m02163 F-box family protein contains F-box dom...    29   3.5  
At4g13540.1 68417.m02111 expressed protein                             28   8.0  

>At1g12840.1 68414.m01491 vacuolar ATP synthase subunit C (VATC) /
           V-ATPase C subunit / vacuolar proton pump C subunit
           (DET3) identical to vacuolar ATP synthase subunit C
           SP:Q9SDS7 from [Arabidopsis thaliana]
          Length = 375

 Score =  176 bits (429), Expect = 1e-44
 Identities = 91/221 (41%), Positives = 135/221 (61%), Gaps = 1/221 (0%)
 Frame = +3

Query: 120 TEYWVISAPGDKTCQQTWDTLNXATXSGNLXVX-YKFPIPDLKVGTLDQLVGLSXDLGKL 296
           + YWV+S P   +    W+ L       +     Y+F IP+L+VGTLD L+ L  DL K 
Sbjct: 3   SRYWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIPNLRVGTLDSLLALGDDLLKS 62

Query: 297 DTFVXGVTXKVAQYLGEVLEDHRDKLHENLMANNSDLPTYLTRFXWDMAKYPIKXSLRNI 476
           ++FV GV+ K+ + + E LE         L  +   + +YLTRF WD AKYP    L+ +
Sbjct: 63  NSFVEGVSQKIRRQIEE-LERISGVESNALTVDGVPVDSYLTRFVWDEAKYPTMSPLKEV 121

Query: 477 ADIISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEY 656
            D I  QV +I+ DLKV+ + YN ++G L+ + +KQ+GSL  R+L++LVK E  I++SE+
Sbjct: 122 VDNIQSQVAKIEDDLKVRVAEYNNIRGQLNAINRKQSGSLAVRDLSNLVKPED-IVESEH 180

Query: 657 LTTLLVIVPKSMFNDWNANYEKITDMIVPRSTQLVHQDNDY 779
           L TLL +VPK    DW A YE +TD +VPRS++ + +DN+Y
Sbjct: 181 LVTLLAVVPKYSQKDWLACYETLTDYVVPRSSKKLFEDNEY 221


>At1g14390.1 68414.m01706 leucine-rich repeat transmembrane protein
           kinase, putative similar to putative receptor-like
           protein kinase GI:2947063 from [Arabidopsis thaliana]
          Length = 747

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -2

Query: 742 GTIMSVIFS*LAFQSLNIDLGTMTRSVVRYSLSKMKCSFLTRSAKLRVNKLPVCFFSK 569
           G+I   + S  + Q+L++    ++ S+   SL   K   L  S  L   KLP CF SK
Sbjct: 239 GSIPRFLLSLPSLQNLSLAQNLLSGSLPNSSLCNSKLRILDVSRNLLTGKLPSCFSSK 296


>At5g50440.1 68418.m06246 Golgi SNARE protein membrin 12 (MEMB12)
           identical to Membrin 12 (AtMEMB12) (Golgi SNAP receptor
           complex member 2-2) (GI:27805575)(SP:Q9FK28)
           {Arabidopsis thaliana}; similar to Probable 27 kDa Golgi
           SNARE protein (Golgi SNAP receptor complex member 2)
           (SP:Q9SJL6) [Arabidopsis thaliana]
          Length = 219

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 24/86 (27%), Positives = 39/86 (45%)
 Frame = +2

Query: 446 VPHKAXSAEYRRHHKQTGRTDRRGSEGQVLRLQRSQRKPTQFREETDRELVDPQLGRSSQ 625
           +P K+    +RR  +Q G      ++     + R+QRK  + +E  D       LGR S 
Sbjct: 65  IPVKSQRDLWRRKSEQVGEEAEYLNQSLEKYMWRNQRKMLEAKERAD------LLGRGSG 118

Query: 626 EGALHLGQRVPDHTPGHRAQVNVQRL 703
           EGA H+ Q   +   G  +  N +R+
Sbjct: 119 EGA-HILQIFDEEAQGMNSVKNSKRM 143


>At5g63720.1 68418.m07998 hypothetical protein 
          Length = 492

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 597 LTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFN 698
           L + L D    EHF+  S  L T L + PK++ +
Sbjct: 42  LLKRLLDFASHEHFVTQSNLLATQLRVFPKTVLH 75


>At4g13985.1 68417.m02163 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 459

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +3

Query: 570 LEKKQTGSLLTRNLADLVKKEH---FILDSEYLTTLLVIVPKSMFNDWNANYEKITDMIV 740
           L  K+T S + +N   L+K +    F L SEY+     +  + +  D+      + DMI+
Sbjct: 255 LNDKRTASFIMKNHGSLLKADIDFVFNLGSEYMFDPNYLPTRHIIRDFLVGLSGVKDMII 314

Query: 741 PRSTQLVHQD 770
             ST  V  D
Sbjct: 315 SSSTLQVIYD 324


>At4g13540.1 68417.m02111 expressed protein
          Length = 210

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 486 ISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTG 590
           ++K V ++  ++K +      LKG ++ +EK+Q G
Sbjct: 133 VAKAVQELRKEVKARGETIETLKGRINLMEKQQNG 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,359,866
Number of Sequences: 28952
Number of extensions: 301720
Number of successful extensions: 760
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)