Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3o07
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 32 0.067
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 29 0.47
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 29 0.62
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 28 0.82
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 28 1.1
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 1.1
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 27 2.5
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f... 26 3.3
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 26 4.4
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 4.4
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 25 5.8
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 25 7.7
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 25 7.7
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 7.7
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 25 7.7
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 7.7
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 31.9 bits (69), Expect = 0.067
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 294 TTPKINFSDTSQVSEGTEEGSATSTLPTTRKTIEKELRSQNTVPSRNMQRGVLDLLLPAY 473
TT +++F D + EG + G LP K +EK S P G+L LL+ Y
Sbjct: 983 TTLQVSFKDL--LLEGIDSGRIDRVLPFVCKVLEKASSSVIFKPPNPWLMGILKLLVELY 1040
Query: 474 RVKTFK 491
+ F+
Sbjct: 1041 QFADFR 1046
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 29.1 bits (62), Expect = 0.47
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +3
Query: 192 SDEPTLSTKDDIHISGMPTQFIEFQLPTKTDMSTTTPKINFSDTSQVSEGTEEGSATSTL 371
SD P+ S + S + + P K +TT+PK+N S+ T +
Sbjct: 396 SDHPS-SQDNSSKASLVENSQTQSSTPRKPLPTTTSPKVNPEPHSESISDTRPSTPRKVP 454
Query: 372 PTTRKTIEKELRSQNTVPSRNMQRGVLDLLLP 467
P+T + +L+ N+V + + VL + P
Sbjct: 455 PSTVPKMNPKLQGGNSVTAPSTPSKVLPAMSP 486
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 28.7 bits (61), Expect = 0.62
Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
Frame = +3
Query: 99 STDDLQTFKFTNFAPSTVN---FHD--IYTNTLALLSDEPTLSTKDDIHISGMPTQFIEF 263
STDDL + ST++ F D I+T+ +S EP+ + ++G + F
Sbjct: 6 STDDLMNSHVFSGGFSTLDDKGFQDVPIHTDMPGSISVEPSSEDANVGSVNGNINETPVF 65
Query: 264 QLPTKTDMSTTTPKINFSDTSQVSEGTEEGSATSTLPTTRKTIEKELRSQNTVPSRNMQR 443
+ +T P S T + S ++ GS L IE E S++ V N+Q
Sbjct: 66 EADRLIAEATMNPSAASSTTGENSI-SQTGSGPF-LRIRIVDIEAE-NSKDPVIKMNVQT 122
Query: 444 GVLDLLLPAYRVKTFKNVFDT---FRKVLSY 527
LPAYR K +KNV T F+K Y
Sbjct: 123 -----TLPAYRSKLYKNVRRTHAEFKKFAKY 148
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 28.3 bits (60), Expect = 0.82
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 138 APSTVNFHDIYTNTLALLSDE-PTLSTKDDIHISGMPTQFIEFQLPTKTDMSTTTPKINF 314
A S+ F Y T + S P ST+ S T+ + P ++++T+T
Sbjct: 140 ATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTE-VTSSYPASSEVATSTSSYVA 198
Query: 315 SDTSQVSEGTE--EGSATSTLPTTRKTI 392
+S V+ +E GSATS +PT+ +I
Sbjct: 199 PVSSSVASSSEISAGSATSYVPTSSSSI 226
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 27.9 bits (59), Expect = 1.1
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 18/133 (13%)
Frame = +3
Query: 90 RAQSTDDLQT--FKFTNFAPSTVNFHDIY----TNTLALLSDEPT-----LSTKDDIH-- 230
R D QT FK +N S+ N H I+ T + ++ + PT L + D H
Sbjct: 697 RQSLNDSPQTSDFKASNLNDSSSNVHSIFQTRETTSPSVQNKTPTKYHRELKSSKDGHEQ 756
Query: 231 ----ISGMPTQFIEFQL-PTKTDMSTTTPKINFSDTSQVSEGTEEGSATSTLPTTRKTIE 395
+S P+ Q+ P T +T ++ S ++ + + TTRKT+
Sbjct: 757 ASPLVSSSPSGSFTSQISPAATTTATNLDAVSLSPSTVRTGSQISDIGNDAISTTRKTVR 816
Query: 396 KELRSQNTVPSRN 434
L + N + N
Sbjct: 817 AFLENANPYSTNN 829
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 203 NFKHKRRYPHQWHAHAIYRVPAAYQNRHVYNYSKN 307
NF KR Y ++H Y + YQ+ YN S N
Sbjct: 297 NFSEKRHYDRYGNSHPSYNKYSHYQHGFNYNNSGN 331
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 99 STDDLQTFKFTNFAPSTVNFHD-IYTNTLALLSDEPTLS-TKDDIHI 233
S DLQT+ N AP +NF++ + + AL+++ S +K DI +
Sbjct: 279 SVGDLQTYLNLNIAPPCINFYERLKQSKPALMAEVKRASPSKGDIKL 325
>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 3.3
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 285 MSTTTPK--INFSDTSQVSEGTEEGSATSTLPTTRKTIEKELRS 410
+S T P I SD SQ+SE + T +TR+ EKEL +
Sbjct: 109 VSKTVPSNAITQSDNSQISESKSTSQSAVTTNSTRRK-EKELEA 151
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 147 TVNFHDI-YTNTLALLSDEPTLSTKDDIHISGMPTQFIEFQLPTKTDMSTTTPKIN 311
T +FHD+ + LA L + LS + +++++ + QF+E + + + T K+N
Sbjct: 101 TSHFHDVNHLCRLANLEMQKELSIEVNMNVTLVQKQFLEMVILHLRNFESVTDKMN 156
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.8 bits (54), Expect = 4.4
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +3
Query: 171 TNTLALLSDEPTLSTKDDIHISGMPTQFIEFQLPTKTDMSTTTPKINFSDTSQVSEGTEE 350
T T ++ PT T + I + T + T+T T TP + T+ V T
Sbjct: 1085 TGTTTVVIQTPTTVTATETDIVTVTTGYTG----TETSTVTVTPTGTATGTTTVVINTPT 1140
Query: 351 GSATSTLPTTRKT 389
+ + LPTT T
Sbjct: 1141 TTGSEVLPTTGAT 1153
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 97 CALVFVDVMSIVVNTVVHLI-SRPY 26
C LVFV + VN++ HLI S+P+
Sbjct: 238 CRLVFVHHATFCVNSLAHLIGSQPF 262
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -3
Query: 430 LEGTVFCERNSFSIVFLVVGNVEVALPSSVPSLT*EVSEKFIFGVVVDMSVLVGSW-NSI 254
L+ VFC + + ++ N + +PS V ++ F+ D+S W N
Sbjct: 10 LKKNVFCREDQIKKLSCLLFNKDCRVPSIVLYGVASTAKTFLLRTAFDLSKEENVWINLQ 69
Query: 253 NCVGMPLMWISSFVLKVG 200
+C + W ++KVG
Sbjct: 70 DCFTVAHFWY-RILIKVG 86
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 25.0 bits (52), Expect = 7.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 105 DDLQTFKFTNFAPSTVNFHDI 167
D + F F + PS++ FHD+
Sbjct: 143 DPVHDFGFFRYDPSSIRFHDV 163
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 286 MSVLVGSWNSINCVGMPLMWIS 221
MS L SWN ++ V + +WIS
Sbjct: 263 MSYLRHSWNRVDFVAIVALWIS 284
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 7.7
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = +3
Query: 222 DIHISGMPTQFIEFQLPTKTDMSTTTPKINFSDTSQVSEGTEEGSATSTLPTTRKTIEKE 401
DIH + Q +E TD+ T K+N D SE ++ + K E
Sbjct: 594 DIHKDKLDQQAVEDLRSKITDLRETVAKVNAGDEGITSEDMKK-KIDEIQQLSLKVFESV 652
Query: 402 LRSQN 416
++QN
Sbjct: 653 YKNQN 657
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 7.7
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 246 TQFIEFQLPTKTDMST-TTPKINFSDTSQVSEGTEEGSATSTLPTTRKTIEKEL 404
T FI L + ST TP + S+ SEG E S ++T + + + L
Sbjct: 128 TPFINALLEASSTPSTYATPSRPTAQKSETSEGEPESSTSATTTSVARRTRQRL 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,180
Number of Sequences: 5004
Number of extensions: 48563
Number of successful extensions: 173
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -