Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o07
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608...    30   1.5  
12_02_0337 + 17709451-17710077,17710167-17710985                       28   5.9  
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671     27   7.8  
07_03_0116 + 13584689-13584725,13585167-13585234,13586091-135861...    27   7.8  
04_04_0701 + 27373057-27374013                                         27   7.8  
03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679...    27   7.8  

>03_06_0221 +
           32458867-32459149,32460271-32460386,32460461-32460807,
           32461231-32461411,32461507-32461629,32461828-32462115,
           32462536-32462688,32463068-32463169,32463260-32463313,
           32463518-32463624,32463867-32463927,32464019-32464150,
           32464245-32464382,32464459-32464539,32464635-32464715,
           32465133-32465213,32465300-32465413
          Length = 813

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 384 KTIEKELRSQNTVPSRNMQRGVLDLLLPAYRVKTFKNVFDTFRK 515
           K ++++LR+ N   S     G+LD +L  +R    K+VF+ F K
Sbjct: 464 KFLDEKLRAGNKGTSEEELEGILDKVLVLFRFIQGKDVFEAFYK 507


>12_02_0337 + 17709451-17710077,17710167-17710985
          Length = 481

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 236 WHAHAIYRVPAAYQNRHVYNY 298
           W  H+++RVPAA ++ H + Y
Sbjct: 31  WSKHSVHRVPAAVKDLHPHAY 51


>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
          Length = 502

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 105 DDLQTFKFTNFAPSTVNFHDIYTNTLALLSDEP 203
           +DL   KF   APST+ +H ++  T  LL+  P
Sbjct: 312 EDLNMHKFCAHAPSTL-YHHLFGRTFELLAKPP 343


>07_03_0116 +
           13584689-13584725,13585167-13585234,13586091-13586195,
           13587498-13587659,13587771-13587824,13587929-13588078,
           13588881-13589090
          Length = 261

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 148 VDGAKFVNLKVCRSSVDCALVFVDVMSIVVNTVVHLISRPYRVDLPDD 5
           V G K+ N +VC+S V     F+DV            SR ++V   +D
Sbjct: 17  VSGVKYGNSQVCKSKVMLLYFFLDVYEKTRRPTGLFFSRRHKVRTDED 64


>04_04_0701 + 27373057-27374013
          Length = 318

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 198 EPTLSTKDDIHISGMPTQFIEFQLPTKTDMSTTTPKINFSDTSQVSE-GTEEGSATST 368
           E   +  DD+ + G+  + ++ + PT    S++   ++   T+  S  GT  GS+  T
Sbjct: 222 EDDTAAADDVEVIGVANKAVKTEAPTSAYSSSSLSSMSRDTTATTSSAGTSTGSSEPT 279


>03_02_0249 -
           6792210-6792215,6794332-6794607,6794692-6795180,
           6795832-6795900,6797316-6797403,6798193-6798224,
           6799277-6799308,6799412-6799646
          Length = 408

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 270 PTKTDMSTTTPKINFSDTSQVSEGTEEGSATSTLPTTRKTI 392
           PT    S     ++  D    S GT++GS++S+ PT   +I
Sbjct: 349 PTTAFESKCRITVDDDDGGSASSGTDDGSSSSSSPTVEASI 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,429,912
Number of Sequences: 37544
Number of extensions: 286800
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)