Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o06
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0941 - 7423284-7423366,7423479-7423749,7423844-7423913,742...    29   3.3  
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083...    29   4.4  
03_04_0205 - 18485933-18488446                                         28   7.7  

>01_01_0941 -
           7423284-7423366,7423479-7423749,7423844-7423913,
           7424034-7424329,7426097-7426642
          Length = 421

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 186 KLESPKTSGKYDTGQLILHKVFGYRG 263
           KLE PK+  K   G  ++ ++FGYRG
Sbjct: 384 KLELPKSFSKIAFGNGLIRRLFGYRG 409


>07_03_1584 +
           27907345-27907357,27907693-27908039,27908202-27908319,
           27908653-27908705,27908808-27908978,27909447-27909643,
           27909729-27909807,27909954-27909992,27910202-27910321,
           27910417-27910518,27910654-27910737,27910832-27911074,
           27911156-27911281,27911365-27911439,27911534-27911605,
           27911807-27911926,27912075-27912172,27912643-27912802,
           27912867-27912980,27913029-27913121,27913122-27913319,
           27913404-27913497,27914032-27914192
          Length = 958

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 378 KEVKGRTHTFYQVLIDTRDAPYIRAQTEAVTFLGNQE-SSRSLYAI-PGLDYVAHDD 542
           +E  GR   FYQ +I + D P  R   E   F+  Q   + S++AI P  D +A  D
Sbjct: 825 EEDGGRRSRFYQTVIGSDDEPPSRCTPEVANFIVKQHFDAPSMWAIFPLQDLLALKD 881


>03_04_0205 - 18485933-18488446
          Length = 837

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 381 EVKGRTHTFYQVLIDTRDAPYIRAQTEAVTFLGNQESSRSLYAIPGLDYVAHD 539
           E+KG  H F    +D  D   I A  E +    N ++SR  Y IP ++ V HD
Sbjct: 709 EIKGEIHAFSVGSVDHPDMRVINAMLEWL----NLKTSREGY-IPDINVVLHD 756


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,086,769
Number of Sequences: 37544
Number of extensions: 377261
Number of successful extensions: 819
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)