Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o03
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    27   3.6  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    26   6.3  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   8.3  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   8.3  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   8.3  

>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 466 EQYDNP-LFSDSLMNVTVMEDLKAGDVSLKNRLNPELGHLIYIMNSYPALAPKVEEMIEE 642
           ++Y++P +  D+   ++ +E LK  +  L+ +L  E    I +      L  ++  +   
Sbjct: 634 DRYEHPKVLEDNDSTISSLESLKRENEELREQLKVEHEENISMQKQLSELKGELNTLRSA 693

Query: 643 MKASCVGD 666
            KAS +GD
Sbjct: 694 RKASPIGD 701


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 406 ILGRNGVGKETALSCISLR 350
           + GRNG+GK T L  +S R
Sbjct: 213 LTGRNGIGKSTLLRALSRR 231


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 406 ILGRNGVGKETALSCISLRPK 344
           ++G NG+GK TAL  +S + K
Sbjct: 108 LVGTNGIGKSTALKILSGKMK 128


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 397  VQEYKTLSSVLSDQHMDDLIFIFEQYDNPLFSDSLM 504
            + ++  LS+    +H+  LI I E+ DNP+  ++L+
Sbjct: 947  LSKFMCLSNNFCMEHLPLLITILEKCDNPIIRNNLV 982


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 343 ILDEAIYKIKLSLCLPHFVQEYKTLSSVLSDQHMDDLIFIFEQY 474
           +L   IY+I+ +   PHFV   +   +  SD   D+  +IF  +
Sbjct: 770 VLRGIIYEIRQNGEEPHFVSTIRVSDNTSSDNPDDNRWYIFNDF 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,841
Number of Sequences: 5004
Number of extensions: 63035
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)