Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o03
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0423 + 8321076-8322164                                           31   0.70 
12_01_0924 + 9161155-9161646,9161748-9162164,9162250-9162313,916...    30   1.6  
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361...    30   1.6  
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189...    30   2.1  
01_06_0474 + 29604201-29604527,29604634-29604988,29605071-296054...    30   2.1  
11_01_0750 - 6315126-6315896,6316371-6316784                           29   2.8  
01_05_0588 - 23456714-23456902,23458533-23458739                       29   4.9  
02_05_0488 + 29448430-29448526,29448649-29448756,29448855-294490...    28   8.6  
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517...    28   8.6  

>03_02_0423 + 8321076-8322164
          Length = 362

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 505 NVTVMEDLKAGDVSLKNRLNPELGHLIYIMNSYPALAPKVEEMIEEMKA 651
           N+ +   L+  D S++      +GH   ++N+Y    P+ +EM+  +KA
Sbjct: 309 NLELCSALRRADHSVEQATYGGVGHAFQVLNNYHLSQPRTQEMLAHIKA 357


>12_01_0924 +
           9161155-9161646,9161748-9162164,9162250-9162313,
           9162621-9163030
          Length = 460

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 595 NSYPALAPKVEEMIEEMKASCVGDEAAPPQP 687
           N  PA AP+VE    E ++SC   EAA  QP
Sbjct: 263 NVDPADAPRVEVSPTERRSSCASTEAAEEQP 293


>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
            3611984-3612217,3614113-3614138,3614446-3614633,
            3615707-3617670,3617938-3618423,3618527-3618894
          Length = 2207

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 484  LFSDSLMNVTVMEDLKAGDVSLKNRLNPELGHLIYIMNSYPA 609
            L S SL N+T +E L      L  ++ P LGHL ++ + Y A
Sbjct: 1372 LISPSLGNLTSLEHLFLNTNQLSGQIPPSLGHLHHLRSLYLA 1413


>10_08_0704 -
           20018477-20018542,20018693-20018704,20018731-20018927,
           20018928-20018999,20019159-20021289
          Length = 825

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 451 LIFIFEQYDNPLFSDSLMNVTVMEDLKAGDVSLKNRLNPELGHLIYI 591
           ++F+F    +     +L ++T +EDL   D  L   + PELGHL ++
Sbjct: 418 VLFMFGNRLSGSIPAALGSLTSLEDLDLSDNDLTGGIPPELGHLSHL 464


>01_06_0474 +
           29604201-29604527,29604634-29604988,29605071-29605411,
           29606502-29606940,29607558-29607913
          Length = 605

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 628 EMIEEMKASCVGDEAAPPQPG 690
           +M+EEM+A C GD AAP + G
Sbjct: 260 DMVEEMRAVCDGDGAAPMEMG 280


>11_01_0750 - 6315126-6315896,6316371-6316784
          Length = 394

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/91 (21%), Positives = 42/91 (46%)
 Frame = +1

Query: 250 DINEKEMDLTKDNSASPIDLECHIQTERITKILDEAIYKIKLSLCLPHFVQEYKTLSSVL 429
           D ++   +LT+   + P+ LE H+ TE+    +    +KI   + +  F+++       L
Sbjct: 250 DDHDGLFELTQKIFSEPMFLEQHLPTEKCHVGISVPNFKISFQIDVKDFLKDMGLELPFL 309

Query: 430 SDQHMDDLIFIFEQYDNPLFSDSLMNVTVME 522
            +    D+I   +    PLF   +++  V+E
Sbjct: 310 REAEFSDMI-KEDDSSGPLFLSDVLHKAVLE 339


>01_05_0588 - 23456714-23456902,23458533-23458739
          Length = 131

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 309 RMSYSNGTHHEDFGRSDIQDKAVSLPT 389
           R  +SN    +DFGR +IQ   V+LPT
Sbjct: 4   RDGFSNNKLLDDFGRGEIQPVQVNLPT 30


>02_05_0488 +
           29448430-29448526,29448649-29448756,29448855-29449000,
           29449109-29449319,29449752-29449989,29450098-29450248,
           29450353-29450682
          Length = 426

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 484 LFSDSLMNVTVMEDLKAGDVSLKNRLNPEL 573
           L  DS + V +  DLKA +V L N++NP++
Sbjct: 214 LHEDSCLKV-IHRDLKASNVLLDNKMNPKI 242


>01_03_0280 -
           14546334-14546815,14546894-14547560,14550333-14551754,
           14552831-14553127
          Length = 955

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 697 IPDPAEAALPHRQRKKPSSPR 635
           +P PA AA P R R  P++PR
Sbjct: 4   LPRPAAAATPRRHRHGPATPR 24


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,194,850
Number of Sequences: 37544
Number of extensions: 375748
Number of successful extensions: 1094
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)