Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o03
         (723 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC030058-1|AAH30058.1|  676|Homo sapiens TTF2 protein protein.         35   0.26 
AL445231-3|CAH71961.1| 1162|Homo sapiens transcription terminati...    35   0.26 
AL391476-7|CAI12738.1| 1162|Homo sapiens transcription terminati...    35   0.26 
AF080255-1|AAD49435.1| 1162|Homo sapiens lodestar protein protein.     35   0.26 
AF073771-1|AAC64044.1| 1162|Homo sapiens RNA polymerase II termi...    35   0.26 
DQ118293-1|AAZ99029.1| 2391|Homo sapiens filaggrin 2 protein.          33   1.4  
BC013151-1|AAH13151.1|  347|Homo sapiens IQ motif containing D p...    33   1.4  
AY827490-1|AAX12417.1| 2391|Homo sapiens ifapsoriasin protein.         33   1.4  
AL356504-2|CAC13173.2| 2391|Homo sapiens filaggrin 2 protein.          33   1.4  
AK127152-1|BAC86856.1|  327|Homo sapiens protein ( Homo sapiens ...    33   1.4  

>BC030058-1|AAH30058.1|  676|Homo sapiens TTF2 protein protein.
          Length = 676

 Score = 35.1 bits (77), Expect = 0.26
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = +1

Query: 433 DQHMDDLIFIFEQYDNPLFSDSLMNVTVMEDLKAGDVSLKNRLNPELG 576
           D+  DD++F+  +  +PL  DS +++   E+L+  D S++ +++P  G
Sbjct: 353 DEEEDDVVFVSSKPGSPLLFDSTLDLETKENLQFPDRSVQRKVSPASG 400


>AL445231-3|CAH71961.1| 1162|Homo sapiens transcription termination
           factor, RNA polymerase II protein.
          Length = 1162

 Score = 35.1 bits (77), Expect = 0.26
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = +1

Query: 433 DQHMDDLIFIFEQYDNPLFSDSLMNVTVMEDLKAGDVSLKNRLNPELG 576
           D+  DD++F+  +  +PL  DS +++   E+L+  D S++ +++P  G
Sbjct: 353 DEEEDDVVFVSSKPGSPLLFDSTLDLETKENLQFPDRSVQRKVSPASG 400


>AL391476-7|CAI12738.1| 1162|Homo sapiens transcription termination
           factor, RNA polymerase II protein.
          Length = 1162

 Score = 35.1 bits (77), Expect = 0.26
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = +1

Query: 433 DQHMDDLIFIFEQYDNPLFSDSLMNVTVMEDLKAGDVSLKNRLNPELG 576
           D+  DD++F+  +  +PL  DS +++   E+L+  D S++ +++P  G
Sbjct: 353 DEEEDDVVFVSSKPGSPLLFDSTLDLETKENLQFPDRSVQRKVSPASG 400


>AF080255-1|AAD49435.1| 1162|Homo sapiens lodestar protein protein.
          Length = 1162

 Score = 35.1 bits (77), Expect = 0.26
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = +1

Query: 433 DQHMDDLIFIFEQYDNPLFSDSLMNVTVMEDLKAGDVSLKNRLNPELG 576
           D+  DD++F+  +  +PL  DS +++   E+L+  D S++ +++P  G
Sbjct: 353 DEEEDDVVFVSSKPGSPLLFDSTLDLETKENLQFPDRSVQRKVSPASG 400


>AF073771-1|AAC64044.1| 1162|Homo sapiens RNA polymerase II
           termination factor protein.
          Length = 1162

 Score = 35.1 bits (77), Expect = 0.26
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = +1

Query: 433 DQHMDDLIFIFEQYDNPLFSDSLMNVTVMEDLKAGDVSLKNRLNPELG 576
           D+  DD++F+  +  +PL  DS +++   E+L+  D S++ +++P  G
Sbjct: 353 DEEEDDVVFVSSKPGSPLLFDSTLDLETKENLQFPDRSVQRKVSPASG 400


>DQ118293-1|AAZ99029.1| 2391|Homo sapiens filaggrin 2 protein.
          Length = 2391

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 31/112 (27%), Positives = 44/112 (39%)
 Frame = +3

Query: 303  RSRMSYSNGTHHEDFGRSDIQDKAVSLPTPFRPRIQDVKFCSVRSAHGRSDFHIRAI**P 482
            +S  + S  +  + F  SD  D  V      RP  Q+       S HG S+  +      
Sbjct: 1331 QSTQTGSRTSGRQRFSHSDATDSEVHSGVSHRPHSQEQTHSQAGSQHGESESTVHER-HE 1389

Query: 483  IVFGQSHECYCHGRLKSG*CVIKKSFESGTRASNLHNEQLSCSST*SRGNDR 638
              +GQ+ E   HG    G    + S  +G R S  H+E  S S   S G+ R
Sbjct: 1390 TTYGQTGEATGHGHSGHGQSTQRGSRTTGRRGSG-HSES-SDSEVHSGGSHR 1439


>BC013151-1|AAH13151.1|  347|Homo sapiens IQ motif containing D
           protein.
          Length = 347

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 319 IQTERITKILDEAIYKIKLSLCLPHFVQEYKTLSSVLSDQHM 444
           I+ +RI  ILDEAIYK++L   L +     + +  +L +  M
Sbjct: 47  IEAKRIMSILDEAIYKVELVTLLSYVASNREDMEGMLGEDVM 88


>AY827490-1|AAX12417.1| 2391|Homo sapiens ifapsoriasin protein.
          Length = 2391

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 31/112 (27%), Positives = 44/112 (39%)
 Frame = +3

Query: 303  RSRMSYSNGTHHEDFGRSDIQDKAVSLPTPFRPRIQDVKFCSVRSAHGRSDFHIRAI**P 482
            +S  + S  +  + F  SD  D  V      RP  Q+       S HG S+  +      
Sbjct: 1331 QSTQTGSRTSGRQRFSHSDATDSEVHSGVSHRPHSQEQTHSQAGSQHGESESTVHER-HE 1389

Query: 483  IVFGQSHECYCHGRLKSG*CVIKKSFESGTRASNLHNEQLSCSST*SRGNDR 638
              +GQ+ E   HG    G    + S  +G R S  H+E  S S   S G+ R
Sbjct: 1390 TTYGQTGEATGHGHSGHGQSTQRGSRTTGRRGSG-HSES-SDSEVHSGGSHR 1439


>AL356504-2|CAC13173.2| 2391|Homo sapiens filaggrin 2 protein.
          Length = 2391

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 31/112 (27%), Positives = 44/112 (39%)
 Frame = +3

Query: 303  RSRMSYSNGTHHEDFGRSDIQDKAVSLPTPFRPRIQDVKFCSVRSAHGRSDFHIRAI**P 482
            +S  + S  +  + F  SD  D  V      RP  Q+       S HG S+  +      
Sbjct: 1331 QSTQTGSRTSGRQRFSHSDATDSEVHSGVSHRPHSQEQTHSQAGSQHGESESTVHER-HE 1389

Query: 483  IVFGQSHECYCHGRLKSG*CVIKKSFESGTRASNLHNEQLSCSST*SRGNDR 638
              +GQ+ E   HG    G    + S  +G R S  H+E  S S   S G+ R
Sbjct: 1390 TTYGQTGEATGHGHSGHGQSTQRGSRTTGRRGSG-HSES-SDSEVHSGGSHR 1439


>AK127152-1|BAC86856.1|  327|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45209 fis, clone BRCAN2015757. ).
          Length = 327

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 319 IQTERITKILDEAIYKIKLSLCLPHFVQEYKTLSSVLSDQHM 444
           I+ +RI  ILDEAIYK++L   L +     + +  +L +  M
Sbjct: 47  IEAKRIMSILDEAIYKVELVTLLSYVASNREDMEGMLGEDVM 88


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,777,135
Number of Sequences: 237096
Number of extensions: 1979918
Number of successful extensions: 4656
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4656
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)