Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o03
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038606-6|AAB92023.2|  464|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z68012-5|CAA92019.1|  408|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U58755-2|AAB00692.1|  362|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AF038606-6|AAB92023.2|  464|Caenorhabditis elegans Hypothetical
           protein C04C3.2 protein.
          Length = 464

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 496 SLMNVTVMEDLKAGDVSLKNRLNPELGHLIYIMNSYPALAPKVEEMIEEMKASCVGDEAA 675
           SL+ +TV+ D+ AG +   + + P LG+ I ++    A+   V   +  M  SC+     
Sbjct: 287 SLLAMTVLLDIVAGAMPKSDAI-PLLGYYIMLVILLCAIGVAVSMAMLSMSRSCIQTSKM 345

Query: 676 PP 681
           PP
Sbjct: 346 PP 347


>Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +1

Query: 520 EDLKAGDVSLKNRLNPELGHL-IYIMNSYPALAPKVEEMIEE 642
           ++ +AG+ + KNR N  LG + +    + P+LAPK  +++EE
Sbjct: 301 DEEEAGEEAAKNRRNLLLGLIGVQEDKNRPSLAPKKRKLVEE 342


>Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +1

Query: 520 EDLKAGDVSLKNRLNPELGHL-IYIMNSYPALAPKVEEMIEE 642
           ++ +AG+ + KNR N  LG + +    + P+LAPK  +++EE
Sbjct: 301 DEEEAGEEAAKNRRNLLLGLIGVQEDKNRPSLAPKKRKLVEE 342


>Z68012-5|CAA92019.1|  408|Caenorhabditis elegans Hypothetical
           protein T24D5.5 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 595 NSYPALAPKVEEMIEEMKASCVGDEAAPP 681
           N+Y  +A K  E    + +SCVG +  PP
Sbjct: 128 NTYEPVASKKSEAFSALASSCVGKKTNPP 156


>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical
           protein R09A8.1 protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 595 NSYPALAPKVEEMIEEMKASCVGDEAAPP 681
           N+Y  +A K  E    + +SCVG +  PP
Sbjct: 50  NTYEPVASKKSEAFSALASSCVGKKTNPP 78


>U58755-2|AAB00692.1|  362|Caenorhabditis elegans Hypothetical
           protein C34D4.10 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 436 QHMDDLIFIFEQYDNPLFSDSLMNVTVMEDLKA 534
           +H+ +      ++D  LF+ S MN TVM DLKA
Sbjct: 260 EHVTNKSIGVNKFDAKLFTASKMNETVMLDLKA 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,065,658
Number of Sequences: 27780
Number of extensions: 343530
Number of successful extensions: 946
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)