Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3o03
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.72 
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    24   1.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.7  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   6.7  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   6.7  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 77  NHYDYVIGKDFCTAESF 127
           +H+ YV G+ FC  +SF
Sbjct: 116 SHFPYVFGEAFCIIQSF 132


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 578 CPSSGFKRFFNDTSPAFKSSMTVTFM 501
           C  +    +F D  P FK + T TFM
Sbjct: 29  CGPNVIDHYFRDLQPLFKLACTDTFM 54


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 306 IDRRSRIIFSKVHLLLVNICH 244
           IDRRSRI+F  V  ++ NI +
Sbjct: 444 IDRRSRIVF-PVAFIIFNILY 463


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 502 MNVTVMEDLKAGDVSLKNRLNPELGH 579
           MN T   D K  DVS  ++++P  GH
Sbjct: 255 MNGTTPLDEKPLDVSSNDKVHPLYGH 280


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 685 AEAALPHRQRKKPSSPRSFP 626
           + AA PH Q   P +  S+P
Sbjct: 435 SHAATPHHQHSTPLAHSSYP 454


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 577 HLIYIMNSYPALAPKVEEMIEEMKASCVGD 666
           H I++  +   + P+V +++ E KA C+ +
Sbjct: 19  HAIFVNAAPDWVPPEVFDLVAEDKARCMSE 48


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 577 HLIYIMNSYPALAPKVEEMIEEMKASCVGD 666
           H I++  +   + P+V +++ E KA C+ +
Sbjct: 19  HAIFVNAAPDWVPPEVFDLVAEDKARCMSE 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,384
Number of Sequences: 438
Number of extensions: 4349
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)