Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n24
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.29 
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    25   4.7  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   4.7  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    25   6.3  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   8.3  

>SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 115

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
 Frame = -1

Query: 418 VFKVGIVNCVFLIH------LFPMV*G---LVCFPNYQYPIFVFLHM 305
           V+ VG V+C FL+H       FP++     +   PN+Q+P+F F+ +
Sbjct: 44  VYLVGQVDCRFLLHHNAKNKQFPLIFVTNFITSLPNFQFPLFFFVSL 90


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -3

Query: 239 PFTCEN*YLICVHSLKPNDPPTTNNINGTPYLKV-LRLLTAINVFRMLSTRAVNPVVIIF 63
           P  CE    I V    PNDP TTN I+  P   + L  +  I      +  A NP  IIF
Sbjct: 401 PKICEKTKFIFVPG--PNDPWTTNGISLMPKHSIPLHFVNRIQRVCKHTIFASNPCRIIF 458


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 210  LCPFPQTKRSSYNK*YKRNTISKSSSLAYG-N*CISYVVYASCKSC 76
            +CP   TK+  Y + YK N +    SL  G N CI+ V +   K+C
Sbjct: 1265 ICP-EFTKQKKYYEQYKEN-LGFFDSLCIGDNECITRVYFLLLKAC 1308



 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = +1

Query: 88  ARVDNIRNTLIAVSKRRTFRYGVPFILFVVGGSFGLREWTQIRYQFSQVKGVSKEEAEKM 267
           A++  +   LI V  +   RY +  I F +  +F   +  +   ++     ++ EEA K+
Sbjct: 783 AKIQIMHACLIDVCLKNRDRYNIFDIAFHINAAFDFVKGDKRSVEYCHYLHLAAEEALKI 842

Query: 268 GLHRE 282
           G ++E
Sbjct: 843 GANQE 847


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 119 INVFRMLSTRAVNPVVIIFS 60
           +N FR+L  R   PVVII S
Sbjct: 39  VNAFRLLMRRFAQPVVIITS 58


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 337 YQYPIFVFLHMQYPKKQF 284
           Y +P+ VF+ +QYP+  F
Sbjct: 12  YFFPLLVFITLQYPRWTF 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,300
Number of Sequences: 5004
Number of extensions: 42452
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)