Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n24
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    29   2.4  
AF045645-2|AAC02609.1|  299|Caenorhabditis elegans Hypothetical ...    27   5.7  
Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z29094-7|CAA82342.2|  453|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF100656-1|AAZ91351.1|  111|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = +1

Query: 178  GGSFGLREWTQIRYQFSQVKGVSKEEAEKMGLHREKTVSLDTAYEEIQKLDIDNWENKRG 357
            G  F L +W  + Y+    + +    A+K+ L RE+ V       E Q+ + + W+    
Sbjct: 1118 GQEFVLIKWKSLGYEEVTWEPIEMIPADKVELWRERQVIDPAKIREKQRPEPEEWKKMST 1177

Query: 358  PRPWEINES 384
             + W+   S
Sbjct: 1178 SKVWKNGNS 1186


>AF045645-2|AAC02609.1|  299|Caenorhabditis elegans Hypothetical
           protein K02D7.5 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 151 GVPFILFVVGGSFGLR 198
           GVPF++ V+GGSF LR
Sbjct: 42  GVPFLMGVLGGSFWLR 57


>Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical
           protein F44F1.4 protein.
          Length = 559

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +1

Query: 250 EEAEKMGLHREKTVSLDTAYEEIQKLDIDNWENKRGPRPWEINESKKHN 396
           E+ +K+   +++ + +    + + K D+D  +NK      +I E+  HN
Sbjct: 416 EDMKKLLEEKDEKILMHVGKQRVMKFDMDILKNKLDESIMKIKEANDHN 464


>Z29094-7|CAA82342.2|  453|Caenorhabditis elegans Hypothetical
           protein C07A9.8 protein.
          Length = 453

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 372 FPWSRASFVFP-IINIQF-LYFFICSIQRNSFFSVKAH 265
           + W     ++P ++N+    YFF+C   R  F S  AH
Sbjct: 270 YDWVPIPLMYPQLVNMAVHTYFFLCIFTRQFFISADAH 307


>AF100656-1|AAZ91351.1|  111|Caenorhabditis elegans Hypothetical
           protein F49F1.14 protein.
          Length = 111

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 115 MYFVCCLREL*ILLSLFSVYLNS 47
           M  VCCL  L ++LSL +  LNS
Sbjct: 47  MRIVCCLLTLLLILSLIAAILNS 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,793,126
Number of Sequences: 27780
Number of extensions: 232719
Number of successful extensions: 618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)