Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n23
         (249 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    20   5.3  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    19   9.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    19   9.3  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 109 RLIFKSIKVFTSAFL*NWYE 50
           RLI +S  V  +A+  +WY+
Sbjct: 179 RLIEESSSVMEAAYSCHWYD 198


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 199 FTRAARRYVKFGNIKKK 249
           + +  RRY K  N KKK
Sbjct: 245 YKKKDRRYEKLHNEKKK 261


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 96  KVSKFSLQRFCKIGMNGFFSLFMFCHLRDFVV 1
           K++KF+ ++     +     +F+ C L  FVV
Sbjct: 323 KLAKFAKEKKAAKTLGIVMGVFIICWLPFFVV 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,392
Number of Sequences: 438
Number of extensions: 496
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)