Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3n18
(677 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81054-4|CAB02885.3| 321|Caenorhabditis elegans Hypothetical pr... 38 0.007
L02877-1|AAA50614.1| 321|Caenorhabditis elegans homeoprotein pr... 38 0.007
Z69659-1|CAA93483.1| 329|Caenorhabditis elegans Hypothetical pr... 36 0.020
U41021-4|AAA82334.1| 348|Caenorhabditis elegans Uncoordinated p... 35 0.061
AF035583-1|AAD09435.1| 348|Caenorhabditis elegans UNC-97 protein. 35 0.061
U41624-2|AAF99943.2| 351|Caenorhabditis elegans C.elegans homeo... 34 0.081
AF244368-1|AAF77181.1| 351|Caenorhabditis elegans LIM homeobox ... 34 0.081
Z81054-5|CAE17755.1| 313|Caenorhabditis elegans Hypothetical pr... 33 0.14
M20244-1|AAA28108.1| 313|Caenorhabditis elegans protein ( C.ele... 33 0.14
Z54237-10|CAJ43909.1| 684|Caenorhabditis elegans Hypothetical p... 33 0.19
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z54237-8|CAE52902.1| 771|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z54237-7|CAB54312.2| 645|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z54235-13|CAJ43902.1| 684|Caenorhabditis elegans Hypothetical p... 33 0.19
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p... 33 0.19
Z54235-10|CAE52905.1| 771|Caenorhabditis elegans Hypothetical p... 33 0.19
Z54235-9|CAB54190.2| 645|Caenorhabditis elegans Hypothetical pr... 33 0.19
U55375-4|AAC69042.3| 287|Caenorhabditis elegans Lim domain fami... 33 0.19
U20861-6|AAA62294.1| 256|Caenorhabditis elegans Temporarily ass... 33 0.25
Z47811-3|CAA87787.2| 723|Caenorhabditis elegans Hypothetical pr... 31 0.57
AF489839-1|AAN09795.1| 723|Caenorhabditis elegans lim and trans... 31 0.57
AY349017-1|AAQ55497.1| 474|Caenorhabditis elegans NHR-91A protein. 31 0.76
AL132841-4|CAB60329.2| 474|Caenorhabditis elegans Hypothetical ... 31 0.76
AF273835-1|AAG15183.1| 476|Caenorhabditis elegans nuclear recep... 31 0.76
AF273834-1|AAG15182.1| 475|Caenorhabditis elegans nuclear recep... 31 0.76
AF273833-1|AAG15181.1| 475|Caenorhabditis elegans nuclear recep... 31 0.76
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 30 1.3
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 30 1.3
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 30 1.7
Z71261-2|CAA95805.1| 813|Caenorhabditis elegans Hypothetical pr... 29 2.3
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 29 2.3
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass... 29 2.3
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 29 2.3
AF039053-17|AAC25882.2| 279|Caenorhabditis elegans Serpentine r... 29 3.0
AF016683-8|AAM97998.1| 480|Caenorhabditis elegans Hypothetical ... 29 3.0
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical p... 28 5.3
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 28 5.3
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 28 5.3
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 28 5.3
AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical ... 28 5.3
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 28 5.3
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 28 5.3
Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical pr... 28 7.0
U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein. 28 7.0
AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain fa... 28 7.0
AC103567-8|AAL35729.1| 305|Caenorhabditis elegans Hypothetical ... 28 7.0
AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine re... 28 7.0
Z81479-10|CAB03945.2| 324|Caenorhabditis elegans Hypothetical p... 27 9.3
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 27 9.3
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 27 9.3
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 27 9.3
AY552606-1|AAS89253.1| 324|Caenorhabditis elegans heparan sulfa... 27 9.3
>Z81054-4|CAB02885.3| 321|Caenorhabditis elegans Hypothetical
protein F01D4.6a protein.
Length = 321
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 451 CSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSSNIHICYGQVFC-EPCFQHHVLHR 627
C+ C + I + +D +++H +C KC C + + G+++C + ++ H +HR
Sbjct: 29 CNCCNEQIYDRYIYRMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSIHR 88
>L02877-1|AAA50614.1| 321|Caenorhabditis elegans homeoprotein
protein.
Length = 321
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 451 CSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSSNIHICYGQVFC-EPCFQHHVLHR 627
C+ C + I + +D +++H +C KC C + + G+++C + ++ H +HR
Sbjct: 29 CNCCNEQIYDRYIYRMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSIHR 88
>Z69659-1|CAA93483.1| 329|Caenorhabditis elegans Hypothetical
protein F07C6.1 protein.
Length = 329
Score = 36.3 bits (80), Expect = 0.020
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +1
Query: 451 CSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSSNIHICYGQVFCEPCF 606
C++C Q ++ ++ + + +H++ KC C V S+ +FC CF
Sbjct: 143 CNKCKQHVDNSDLLTYQENPYHAYHFKCTTCKKVLESDARTIKDDLFCPRCF 194
>U41021-4|AAA82334.1| 348|Caenorhabditis elegans Uncoordinated
protein 97 protein.
Length = 348
Score = 34.7 bits (76), Expect = 0.061
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 442 RSVCSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSSNIHICYGQVFCEPC 603
R VC +C MI++ I+ +FH + KC C+ ++ G+++C C
Sbjct: 143 RYVCHKCHAMIDDGQHIKFRGDSFHPYHFKCKRCNNELTTASREVNGELYCLRC 196
>AF035583-1|AAD09435.1| 348|Caenorhabditis elegans UNC-97 protein.
Length = 348
Score = 34.7 bits (76), Expect = 0.061
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 442 RSVCSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSSNIHICYGQVFCEPC 603
R VC +C MI++ I+ +FH + KC C+ ++ G+++C C
Sbjct: 143 RYVCHKCHAMIDDGQHIKFRGDSFHPYHFKCKRCNNELTTASREVNGELYCLRC 196
>U41624-2|AAF99943.2| 351|Caenorhabditis elegans C.elegans homeobox
protein 14 protein.
Length = 351
Score = 34.3 bits (75), Expect = 0.081
Identities = 14/66 (21%), Positives = 29/66 (43%)
Frame = +1
Query: 409 SKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSSNIHICYGQV 588
S A N + ++CS C + I + +++ + +HS C +C C + + +
Sbjct: 34 SNVNAGHPNNEEAICSLCDKKIRDRFVSKVNGRCYHSSCLRCSTCKDELGATCFLREDSM 93
Query: 589 FCEPCF 606
+C F
Sbjct: 94 YCRAHF 99
>AF244368-1|AAF77181.1| 351|Caenorhabditis elegans LIM homeobox
protein CEH-14 protein.
Length = 351
Score = 34.3 bits (75), Expect = 0.081
Identities = 14/66 (21%), Positives = 29/66 (43%)
Frame = +1
Query: 409 SKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSSNIHICYGQV 588
S A N + ++CS C + I + +++ + +HS C +C C + + +
Sbjct: 34 SNVNAGHPNNEEAICSLCDKKIRDRFVSKVNGRCYHSSCLRCSTCKDELGATCFLREDSM 93
Query: 589 FCEPCF 606
+C F
Sbjct: 94 YCRAHF 99
>Z81054-5|CAE17755.1| 313|Caenorhabditis elegans Hypothetical
protein F01D4.6b protein.
Length = 313
Score = 33.5 bits (73), Expect = 0.14
Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 493 EIDKQAFHSHCAKCYFCHTVPSSNIHICYGQVFC-EPCFQHHVLHR 627
++D +++H +C KC C + + G+++C + ++ H +HR
Sbjct: 35 QMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSIHR 80
>M20244-1|AAA28108.1| 313|Caenorhabditis elegans protein (
C.elegans mec-3 geneencoding differentiation of the six
touch receptor neurons,complete cds. ).
Length = 313
Score = 33.5 bits (73), Expect = 0.14
Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 493 EIDKQAFHSHCAKCYFCHTVPSSNIHICYGQVFC-EPCFQHHVLHR 627
++D +++H +C KC C + + G+++C + ++ H +HR
Sbjct: 35 QMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSIHR 80
>Z54237-10|CAJ43909.1| 684|Caenorhabditis elegans Hypothetical
protein T11B7.4e protein.
Length = 684
Score = 33.1 bits (72), Expect = 0.19
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Frame = +1
Query: 265 GHVFCNGCFKQHVLDRFR-------GEC-PSVHTNWAQ--WTCGK----FGNGQEGDNPG 402
G FC CF+QH+ R +C ++ W +TC FGN G
Sbjct: 556 GQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQG 615
Query: 403 ASSKSEASEGNTKRSVCSRCLQMINENNK-IEIDKQAFHSHCAKCYFC-HTVPSSNIHIC 576
E + C C I ++ +E AFHS+C C C H + +
Sbjct: 616 LPY-CEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAK 674
Query: 577 YGQVFC 594
GQ FC
Sbjct: 675 NGQPFC 680
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 580 GQVFCEPCFQHHVLHR 627
GQ FCE CF+ H+ R
Sbjct: 556 GQKFCESCFEQHIAPR 571
>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical protein
T11B7.4d protein.
Length = 1424
Score = 33.1 bits (72), Expect = 0.19
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Frame = +1
Query: 265 GHVFCNGCFKQHVLDRFR-------GEC-PSVHTNWAQ--WTCGK----FGNGQEGDNPG 402
G FC CF+QH+ R +C ++ W +TC FGN G
Sbjct: 1296 GQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQG 1355
Query: 403 ASSKSEASEGNTKRSVCSRCLQMINENNK-IEIDKQAFHSHCAKCYFC-HTVPSSNIHIC 576
E + C C I ++ +E AFHS+C C C H + +
Sbjct: 1356 LPY-CEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAK 1414
Query: 577 YGQVFC 594
GQ FC
Sbjct: 1415 NGQPFC 1420
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 580 GQVFCEPCFQHHVLHR 627
GQ FCE CF+ H+ R
Sbjct: 1296 GQKFCESCFEQHIAPR 1311
>Z54237-8|CAE52902.1| 771|Caenorhabditis elegans Hypothetical protein
T11B7.4c protein.
Length = 771
Score = 33.1 bits (72), Expect = 0.19
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Frame = +1
Query: 265 GHVFCNGCFKQHVLDRFR-------GEC-PSVHTNWAQ--WTCGK----FGNGQEGDNPG 402
G FC CF+QH+ R +C ++ W +TC FGN G
Sbjct: 643 GQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQG 702
Query: 403 ASSKSEASEGNTKRSVCSRCLQMINENNK-IEIDKQAFHSHCAKCYFC-HTVPSSNIHIC 576
E + C C I ++ +E AFHS+C C C H + +
Sbjct: 703 LPY-CEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAK 761
Query: 577 YGQVFC 594
GQ FC
Sbjct: 762 NGQPFC 767
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 580 GQVFCEPCFQHHVLHR 627
GQ FCE CF+ H+ R
Sbjct: 643 GQKFCESCFEQHIAPR 658
>Z54237-7|CAB54312.2| 645|Caenorhabditis elegans Hypothetical
protein T11B7.4b protein.
Length = 645
Score = 33.1 bits (72), Expect = 0.19
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Frame = +1
Query: 265 GHVFCNGCFKQHVLDRFR-------GEC-PSVHTNWAQ--WTCGK----FGNGQEGDNPG 402
G FC CF+QH+ R +C ++ W +TC FGN G
Sbjct: 517 GQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQG 576
Query: 403 ASSKSEASEGNTKRSVCSRCLQMINENNK-IEIDKQAFHSHCAKCYFC-HTVPSSNIHIC 576
E + C C I ++ +E AFHS+C C C H + +
Sbjct: 577 LPY-CEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAK 635
Query: 577 YGQVFC 594
GQ FC
Sbjct: 636 NGQPFC 641
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 580 GQVFCEPCFQHHVLHR 627
GQ FCE CF+ H+ R
Sbjct: 517 GQKFCESCFEQHIAPR 532
>Z54235-13|CAJ43902.1| 684|Caenorhabditis elegans Hypothetical
protein T11B7.4e protein.
Length = 684
Score = 33.1 bits (72), Expect = 0.19
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Frame = +1
Query: 265 GHVFCNGCFKQHVLDRFR-------GEC-PSVHTNWAQ--WTCGK----FGNGQEGDNPG 402
G FC CF+QH+ R +C ++ W +TC FGN G
Sbjct: 556 GQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQG 615
Query: 403 ASSKSEASEGNTKRSVCSRCLQMINENNK-IEIDKQAFHSHCAKCYFC-HTVPSSNIHIC 576
E + C C I ++ +E AFHS+C C C H + +
Sbjct: 616 LPY-CEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAK 674
Query: 577 YGQVFC 594
GQ FC
Sbjct: 675 NGQPFC 680
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 580 GQVFCEPCFQHHVLHR 627
GQ FCE CF+ H+ R
Sbjct: 556 GQKFCESCFEQHIAPR 571
>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 33.1 bits (72), Expect = 0.19
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Frame = +1
Query: 265 GHVFCNGCFKQHVLDRFR-------GEC-PSVHTNWAQ--WTCGK----FGNGQEGDNPG 402
G FC CF+QH+ R +C ++ W +TC FGN G
Sbjct: 1296 GQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQG 1355
Query: 403 ASSKSEASEGNTKRSVCSRCLQMINENNK-IEIDKQAFHSHCAKCYFC-HTVPSSNIHIC 576
E + C C I ++ +E AFHS+C C C H + +
Sbjct: 1356 LPY-CEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAK 1414
Query: 577 YGQVFC 594
GQ FC
Sbjct: 1415 NGQPFC 1420
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 580 GQVFCEPCFQHHVLHR 627
GQ FCE CF+ H+ R
Sbjct: 1296 GQKFCESCFEQHIAPR 1311
>Z54235-10|CAE52905.1| 771|Caenorhabditis elegans Hypothetical
protein T11B7.4c protein.
Length = 771
Score = 33.1 bits (72), Expect = 0.19
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Frame = +1
Query: 265 GHVFCNGCFKQHVLDRFR-------GEC-PSVHTNWAQ--WTCGK----FGNGQEGDNPG 402
G FC CF+QH+ R +C ++ W +TC FGN G
Sbjct: 643 GQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQG 702
Query: 403 ASSKSEASEGNTKRSVCSRCLQMINENNK-IEIDKQAFHSHCAKCYFC-HTVPSSNIHIC 576
E + C C I ++ +E AFHS+C C C H + +
Sbjct: 703 LPY-CEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAK 761
Query: 577 YGQVFC 594
GQ FC
Sbjct: 762 NGQPFC 767
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 580 GQVFCEPCFQHHVLHR 627
GQ FCE CF+ H+ R
Sbjct: 643 GQKFCESCFEQHIAPR 658
>Z54235-9|CAB54190.2| 645|Caenorhabditis elegans Hypothetical
protein T11B7.4b protein.
Length = 645
Score = 33.1 bits (72), Expect = 0.19
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Frame = +1
Query: 265 GHVFCNGCFKQHVLDRFR-------GEC-PSVHTNWAQ--WTCGK----FGNGQEGDNPG 402
G FC CF+QH+ R +C ++ W +TC FGN G
Sbjct: 517 GQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQG 576
Query: 403 ASSKSEASEGNTKRSVCSRCLQMINENNK-IEIDKQAFHSHCAKCYFC-HTVPSSNIHIC 576
E + C C I ++ +E AFHS+C C C H + +
Sbjct: 577 LPY-CEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAK 635
Query: 577 YGQVFC 594
GQ FC
Sbjct: 636 NGQPFC 641
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 580 GQVFCEPCFQHHVLHR 627
GQ FCE CF+ H+ R
Sbjct: 517 GQKFCESCFEQHIAPR 532
>U55375-4|AAC69042.3| 287|Caenorhabditis elegans Lim domain family
protein 6 protein.
Length = 287
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 415 SEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSSNIHICY---GQ 585
S + T+ +CS C +I + + + ++H C +C C + S+ C+ G
Sbjct: 7 SATTSSTTEDKLCSGCGCLIKDRYIYRVMEDSYHESCLRCSCCQ-LSLSSFKKCFSRHGN 65
Query: 586 VFCEPCFQHHVLH 624
++CE H +L+
Sbjct: 66 IYCE--HDHQMLY 76
>U20861-6|AAA62294.1| 256|Caenorhabditis elegans Temporarily
assigned gene nameprotein 327, isoform a protein.
Length = 256
Score = 32.7 bits (71), Expect = 0.25
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 6/118 (5%)
Frame = +1
Query: 277 CNGCFKQHVLDRFRGECPSVHTNWAQ-----WTCGKFGNGQEGDNPGASSKSEASEGNTK 441
CNGC Q + F ++ T+W CG NG + E ++
Sbjct: 137 CNGC-SQPITSNF---ITALGTHWHPDCFVCQHCGVSFNGASFFEHNGAPLCERHYHESR 192
Query: 442 RSVCSRCLQMINENNKIEIDKQAFHSHCAKCYFC-HTVPSSNIHICYGQVFCEPCFQH 612
S+CS+C IN + ++ FH +C +C H + + FC C+ +
Sbjct: 193 GSICSQCRGAINGRCVAAMGRK-FHPEHFRCSYCNHQLTKGTFKEVDRRPFCHKCYNN 249
>Z47811-3|CAA87787.2| 723|Caenorhabditis elegans Hypothetical
protein K02C4.4 protein.
Length = 723
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 433 NTKRSVCSRCLQMINENNKIEI--DKQAFHSHCAKCYFCHT 549
N+K+ C+RC + + +K+ D FH C KCY C T
Sbjct: 2 NSKQH-CNRCGKQVYPTDKVGPLKDSTFFHQGCFKCYICGT 41
>AF489839-1|AAN09795.1| 723|Caenorhabditis elegans lim and
transglutaminase domainprotein protein.
Length = 723
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 433 NTKRSVCSRCLQMINENNKIEI--DKQAFHSHCAKCYFCHT 549
N+K+ C+RC + + +K+ D FH C KCY C T
Sbjct: 2 NSKQH-CNRCGKQVYPTDKVGPLKDSTFFHQGCFKCYICGT 41
>AY349017-1|AAQ55497.1| 474|Caenorhabditis elegans NHR-91A protein.
Length = 474
Score = 31.1 bits (67), Expect = 0.76
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 361 CGKFGNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYF 540
C G+ G + GA++ E +G KRSV ++ + +++N EIDKQ + C C F
Sbjct: 100 CSVCGDKSTGLHYGAAT-CEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQN-RNRCQSCRF 157
>AL132841-4|CAB60329.2| 474|Caenorhabditis elegans Hypothetical
protein Y15E3A.1a protein.
Length = 474
Score = 31.1 bits (67), Expect = 0.76
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 361 CGKFGNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYF 540
C G+ G + GA++ E +G KRSV ++ + +++N EIDKQ + C C F
Sbjct: 100 CSVCGDKSTGLHYGAAT-CEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQN-RNRCQSCRF 157
>AF273835-1|AAG15183.1| 476|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 476
Score = 31.1 bits (67), Expect = 0.76
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 361 CGKFGNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYF 540
C G+ G + GA++ E +G KRSV ++ + +++N EIDKQ + C C F
Sbjct: 102 CSVCGDKSTGLHYGAAT-CEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQN-RNRCQSCRF 159
>AF273834-1|AAG15182.1| 475|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 475
Score = 31.1 bits (67), Expect = 0.76
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 361 CGKFGNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYF 540
C G+ G + GA++ E +G KRSV ++ + +++N EIDKQ + C C F
Sbjct: 101 CSVCGDKSTGLHYGAAT-CEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQN-RNRCQSCRF 158
>AF273833-1|AAG15181.1| 475|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 475
Score = 31.1 bits (67), Expect = 0.76
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 361 CGKFGNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYF 540
C G+ G + GA++ E +G KRSV ++ + +++N EIDKQ + C C F
Sbjct: 101 CSVCGDKSTGLHYGAAT-CEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQN-RNRCQSCRF 158
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical protein
T10G3.5b protein.
Length = 1203
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 14/107 (13%)
Frame = +1
Query: 388 GDNPGASSKSEASEGNTKR--SVCSRCLQMINENNKIEIDKQAFHS----------HCAK 531
G + E S+ N +R S ++ N ++ID + S +C +
Sbjct: 1093 GSESDIEYEKERSQENKRRFDDALSAMHELGRANQSLQIDADRYSSRKWLDDAEAINCTE 1152
Query: 532 C--YFCHTVPSSNIHICYGQVFCEPCFQHHVLHRHKDNPNEFFKQCF 666
C F TV + +C G+++C PC V NP CF
Sbjct: 1153 CGKVFSLTVRKHHCRVC-GKIYCNPCSSKSVRIASAKNPVRACNTCF 1198
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical protein
T10G3.5a protein.
Length = 1205
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 14/107 (13%)
Frame = +1
Query: 388 GDNPGASSKSEASEGNTKR--SVCSRCLQMINENNKIEIDKQAFHS----------HCAK 531
G + E S+ N +R S ++ N ++ID + S +C +
Sbjct: 1095 GSESDIEYEKERSQENKRRFDDALSAMHELGRANQSLQIDADRYSSRKWLDDAEAINCTE 1154
Query: 532 C--YFCHTVPSSNIHICYGQVFCEPCFQHHVLHRHKDNPNEFFKQCF 666
C F TV + +C G+++C PC V NP CF
Sbjct: 1155 CGKVFSLTVRKHHCRVC-GKIYCNPCSSKSVRIASAKNPVRACNTCF 1200
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 14/107 (13%)
Frame = +1
Query: 388 GDNPGASSKSEASEGNTKR--SVCSRCLQMINENNKIEIDKQAFHS----------HCAK 531
G + E S+ N +R S ++ N ++ID + S +C +
Sbjct: 1095 GSESDIEYEKERSQENKRRFDDALSAMHELGRANQSLQIDADRYSSRKWLDDAEAINCTE 1154
Query: 532 C--YFCHTVPSSNIHICYGQVFCEPCFQHHVLHRHKDNPNEFFKQCF 666
C F TV + +C G+++C PC V NP CF
Sbjct: 1155 CGKVFSLTVRKHHCRVC-GKIYCNPCSSKSVRIASAKNPVRACNTCF 1200
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 473 STRITKLKLTSRPSIVTVPSAIFATRFHRPTSTS-AMVKSSASLASNITSCTDIRTTPM 646
++ IT ++ PS TVPS +T +P+S S A ++ L SN+TS T+P+
Sbjct: 283 TSTITSTGSSNPPSTSTVPSTTTSTTTPKPSSPSTAEASTTPVLTSNLTSAL-TSTSPL 340
>Z71261-2|CAA95805.1| 813|Caenorhabditis elegans Hypothetical
protein F21C3.2 protein.
Length = 813
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -2
Query: 580 HSRCGCWTME-PCGKNSTWHSDYGRPACQ 497
H+ C W+ C KN W S+ R +CQ
Sbjct: 640 HTNCAMWSRSGECNKNPLWMSENCRSSCQ 668
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily assigned
gene nameprotein 204, isoform b protein.
Length = 868
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +1
Query: 403 ASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQA--FHSHCAKCYFCHT-----VPSS 561
+S K ++ + + C+ C + + + ++ +H C KCY C T +
Sbjct: 784 SSQKDDSVVAVSGKHRCAHCNEELGRGAAMIVESLNLFYHLACFKCYVCKTSLGSGATGA 843
Query: 562 NIHICYGQVFCEPCFQH 612
++ + G++ C+ C+ +
Sbjct: 844 DVRVRDGRLHCQTCYSN 860
>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily assigned
gene nameprotein 204, isoform a protein.
Length = 1004
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +1
Query: 403 ASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQA--FHSHCAKCYFCHT-----VPSS 561
+S K ++ + + C+ C + + + ++ +H C KCY C T +
Sbjct: 920 SSQKDDSVVAVSGKHRCAHCNEELGRGAAMIVESLNLFYHLACFKCYVCKTSLGSGATGA 979
Query: 562 NIHICYGQVFCEPCFQH 612
++ + G++ C+ C+ +
Sbjct: 980 DVRVRDGRLHCQTCYSN 996
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily assigned
gene nameprotein 204, isoform c protein.
Length = 1099
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +1
Query: 403 ASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQA--FHSHCAKCYFCHT-----VPSS 561
+S K ++ + + C+ C + + + ++ +H C KCY C T +
Sbjct: 1015 SSQKDDSVVAVSGKHRCAHCNEELGRGAAMIVESLNLFYHLACFKCYVCKTSLGSGATGA 1074
Query: 562 NIHICYGQVFCEPCFQH 612
++ + G++ C+ C+ +
Sbjct: 1075 DVRVRDGRLHCQTCYSN 1091
>AF039053-17|AAC25882.2| 279|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 16 protein.
Length = 279
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 9 NEIFFHFQTLLFSLLFKFYF 68
N I FHF +LF+ LFK +F
Sbjct: 218 NVIIFHFSPILFAFLFKHWF 237
>AF016683-8|AAM97998.1| 480|Caenorhabditis elegans Hypothetical
protein K09F6.10 protein.
Length = 480
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = +1
Query: 514 HSHCAKCYFCHTVPS--SNIHICYGQVFCEPCFQ 609
+ C KC F H S +H C+ FC+ C Q
Sbjct: 400 YEKCKKCGFIHRKDSYSKTVHKCHDNAFCKICRQ 433
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Frame = -1
Query: 671 CSKHCL----KNSLGLSLCRCK 618
C KHCL NS G SLC+C+
Sbjct: 463 CHKHCLYGFETNSAGCSLCKCR 484
>Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Frame = -1
Query: 671 CSKHCL----KNSLGLSLCRCK 618
C KHCL NS G SLC+C+
Sbjct: 397 CHKHCLYGFETNSAGCSLCKCR 418
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Frame = -1
Query: 671 CSKHCL----KNSLGLSLCRCK 618
C KHCL NS G SLC+C+
Sbjct: 397 CHKHCLYGFETNSAGCSLCKCR 418
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Frame = -1
Query: 671 CSKHCL----KNSLGLSLCRCK 618
C KHCL NS G SLC+C+
Sbjct: 463 CHKHCLYGFETNSAGCSLCKCR 484
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Frame = -1
Query: 671 CSKHCL----KNSLGLSLCRCK 618
C KHCL NS G SLC+C+
Sbjct: 397 CHKHCLYGFETNSAGCSLCKCR 418
>AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Frame = -1
Query: 671 CSKHCL----KNSLGLSLCRCK 618
C KHCL NS G SLC+C+
Sbjct: 397 CHKHCLYGFETNSAGCSLCKCR 418
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Frame = -1
Query: 671 CSKHCL----KNSLGLSLCRCK 618
C KHCL NS G SLC+C+
Sbjct: 397 CHKHCLYGFETNSAGCSLCKCR 418
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Frame = -1
Query: 671 CSKHCL----KNSLGLSLCRCK 618
C KHCL NS G SLC+C+
Sbjct: 397 CHKHCLYGFETNSAGCSLCKCR 418
>Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical
protein C29E6.4 protein.
Length = 906
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 512 SIVTVPSAIFATRFHRPTSTSAMVKSSASLASNIT 616
S VP++I +T RPT+ S VKSS + S T
Sbjct: 453 STTHVPTSIRSTSSARPTTYSTTVKSSTTTVSTST 487
>U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein.
Length = 452
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +1
Query: 409 SKSEASEGNTKRSVCSRCLQMINENNKIEIDKQA-FHSHCAKCYFCHTVPSSN--IHICY 579
S E + +VC+ C I++ + ++ FH+ C KC C N +
Sbjct: 42 SPVEQRQHQPPMAVCAGCRLEISDRYFLRVNPNLEFHAQCLKCVQCSRPLDENQTAFVKN 101
Query: 580 GQVFC 594
GQ +C
Sbjct: 102 GQTYC 106
>AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain
family protein 7 protein.
Length = 452
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +1
Query: 409 SKSEASEGNTKRSVCSRCLQMINENNKIEIDKQA-FHSHCAKCYFCHTVPSSN--IHICY 579
S E + +VC+ C I++ + ++ FH+ C KC C N +
Sbjct: 42 SPVEQRQHQPPMAVCAGCRLEISDRYFLRVNPNLEFHAQCLKCVQCSRPLDENQTAFVKN 101
Query: 580 GQVFC 594
GQ +C
Sbjct: 102 GQTYC 106
>AC103567-8|AAL35729.1| 305|Caenorhabditis elegans Hypothetical
protein Y51F10.2 protein.
Length = 305
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = +1
Query: 445 SVCSRCLQMINENNKIE-----IDKQAFHSHCAKCYFCHTVPSSNIHICY 579
+VC RC+ +++E ++I ID+ H C C P + I Y
Sbjct: 41 TVCERCIGLLDEQSRINHNRPPIDRSFVHIRCPVCRAVTQTPRNYIRSNY 90
>AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 65 protein.
Length = 325
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 259 FYGHVFCNGCFKQHVLDRFRGECPSVHTNWAQWTCGKFGNGQE 387
F G FC C+K + ++HT + + C K N QE
Sbjct: 83 FLGPTFCATCYKAYATSVLTVNLINLHTLYYRTVCLKLINAQE 125
>Z81479-10|CAB03945.2| 324|Caenorhabditis elegans Hypothetical
protein C34F6.4 protein.
Length = 324
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 2 WSKRNIFSFSNIAVFVTIQILFQYIPTQKSQV 97
W KR + F+ I+VF+ I +L + K+ V
Sbjct: 3 WKKRKVLYFAGISVFILILLLLKLNSKPKANV 34
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -3
Query: 669 LEALLE-EFIGVVLMSVQDVMLEARLAEDLTIADVDVGRWNRVAKIALGTVTMEGLLVNF 493
L+ L+E E + ++ S ++ LE +L+ED + +V + + A + + +EG+ V+F
Sbjct: 809 LKRLMEDESLRELVCSKLNLGLEVKLSEDEYVKEVQLTKGQFKAYVKILKACLEGIEVSF 868
Query: 492 N 490
N
Sbjct: 869 N 869
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -3
Query: 669 LEALLE-EFIGVVLMSVQDVMLEARLAEDLTIADVDVGRWNRVAKIALGTVTMEGLLVNF 493
L+ L+E E + ++ S ++ LE +L+ED + +V + + A + + +EG+ V+F
Sbjct: 809 LKRLMEDESLRELVCSKLNLGLEVKLSEDEYVKEVQLTKGQFKAYVKILKACLEGIEVSF 868
Query: 492 N 490
N
Sbjct: 869 N 869
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -3
Query: 669 LEALLE-EFIGVVLMSVQDVMLEARLAEDLTIADVDVGRWNRVAKIALGTVTMEGLLVNF 493
L+ L+E E + ++ S ++ LE +L+ED + +V + + A + + +EG+ V+F
Sbjct: 809 LKRLMEDESLRELVCSKLNLGLEVKLSEDEYVKEVQLTKGQFKAYVKILKACLEGIEVSF 868
Query: 492 N 490
N
Sbjct: 869 N 869
>AY552606-1|AAS89253.1| 324|Caenorhabditis elegans heparan
sulfate 2O-sulfotransferase protein.
Length = 324
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 2 WSKRNIFSFSNIAVFVTIQILFQYIPTQKSQV 97
W KR + F+ I+VF+ I +L + K+ V
Sbjct: 3 WKKRKVLYFAGISVFILILLLLKLNSKPKANV 34
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,069,860
Number of Sequences: 27780
Number of extensions: 352762
Number of successful extensions: 1148
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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