Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n17
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    33   0.032
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    29   0.52 
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    28   1.6  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    28   1.6  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    27   3.6  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    26   4.8  
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    26   6.4  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   8.4  
SPBC27.05 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual          25   8.4  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   8.4  

>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 33.5 bits (73), Expect = 0.032
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
 Frame = +1

Query: 241 VERPHHHYKPMGTGSFTGDSQLLHDAKHLEEDSKVLTPAMLASMTPEELEFHYFSIHDFD 420
           +E P HH       +   D  +L + K+ +  +K  T     +M  EE E H  S  +  
Sbjct: 27  IEEPEHHDNSNKESTNLDDLNMLEEPKYHDNSNKESTNLDDLNML-EEPEHHDNSKKE-- 83

Query: 421 RNTKLDGSEMLKAVYH--TLDHESPNPDD-DSSIEPEAND 531
            +T LD S ML+   H    + ES N DD + S EP+ +D
Sbjct: 84  -STNLDDSNMLEEPKHHDNSNKESTNLDDLNMSEEPKHHD 122



 Score = 29.5 bits (63), Expect = 0.52
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +1

Query: 241 VERPHHHYKPMGTGSFTGDSQLLHDAKHLEEDSKVLTPAMLASMTPEELEFHYFSIHDFD 420
           +E P HH       +   DS +L + KH +  +K  T     +M+ EE + H  S  +  
Sbjct: 71  LEEPEHHDNSKKESTNLDDSNMLEEPKHHDNSNKESTNLDDLNMS-EEPKHHDSSNKE-- 127

Query: 421 RNTKLDGSEMLKAV-YHTLDHESPNPDDD 504
            +T LD S M ++        E P P  D
Sbjct: 128 -STNLDNSNMDESENQKNFKIEEPKPSGD 155


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 406 IHDFDRNTKLDGSEMLKAVYHTLDHESPNPDDDSSIEPE 522
           +HD+D+N+ ++  ++L+   HT   E  N  D +  + E
Sbjct: 129 VHDYDKNSPIENEKILEDDQHTAMKEKDNESDKTMKDVE 167


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 553 VDRTLQFDDTDGDGYVSYPEYRAAR 627
           +D T  F D+D D YVSY   RA+R
Sbjct: 198 MDNTTAFYDSDHDEYVSYGGKRASR 222


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 568 QFDDTDGDGYVSYPEYRAARARNPSKKASRILDN 669
           Q DDTDGD   S  EYR +  R      +R L +
Sbjct: 61  QSDDTDGDVSESQSEYRLSSGRRSRASFARALQD 94


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 173 RYANLDFNSIIFILIHSFPFYISANSISRLNNQ-INRQ 63
           RY  + FN +I +LI S    ISA+ +SR   Q +N+Q
Sbjct: 580 RYKLIVFNLLIALLILSILTIISASRLSRRRRQLLNKQ 617


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 298 SQLLHDAKHLEEDSKVLTPAMLASMTPEE-LEFHYFSIHDFDRNTKLDGSEMLKAVYHTL 474
           SQ++       ED K L    +  +   E ++  ++ +   D    L+G   ++ +Y  +
Sbjct: 233 SQMVVSVYDKYEDDKFLGSVKITPIFLHEYVQEAWYKLEPLDLTKSLEGEIKVETIYEHI 292

Query: 475 DHESPNPDDDSSI 513
           +H    P+D +++
Sbjct: 293 EHVRYGPEDFTAL 305


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +1

Query: 400 FSIHDFDRNTKLDGSEMLK---AVYHTLDHESPNPDDDSSIEPEANDLDSFIVLVDRTLQ 570
           F ++D D N  +   EML+   A+Y  +      P+D+ + E   N + + +        
Sbjct: 105 FQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMM-------- 156

Query: 571 FDDTDGDGYVSYPEYRAARARNPS 642
             D + DG ++  E+     R+P+
Sbjct: 157 --DKNKDGQLTLEEFCEGSKRDPT 178


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 131 IHSFPFYISANSISRLNNQINRQ 63
           +HS    +S  S++R NN INR+
Sbjct: 26  VHSSTKELSGESLARFNNDINRR 48


>SPBC27.05 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 718 YRTIN*NSPIYYYPVLCYRVFLMLSLKD 635
           Y T N  +   Y   +C R+FLM S+ D
Sbjct: 64  YNTFNNTNEHMYLQPICNRIFLMTSIID 91


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 193 VFALRRGPHHPPGQTPVERPHHHYKPMGTGSFTGDSQLLHDAKHLEEDSK 342
           V+A+R       G  P+E  H  +    TG F  D  + ++ K LE + K
Sbjct: 40  VYAVRWAAEMLNGMNPIEMEHIPFSSTPTGEFDLDPDMANE-KLLEVEEK 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,083
Number of Sequences: 5004
Number of extensions: 64098
Number of successful extensions: 218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)