Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n17
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72511-1|CAA96655.1|  186|Caenorhabditis elegans Hypothetical pr...    77   1e-14
Z72513-3|CAA96671.2|  127|Caenorhabditis elegans Hypothetical pr...    64   1e-10
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    37   0.017
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    37   0.017
L23651-2|ABA54424.1|  124|Caenorhabditis elegans Hypothetical pr...    36   0.030
AF078783-5|AAC26922.1|  236|Caenorhabditis elegans Hypothetical ...    34   0.12 
Z81072-1|CAB03019.1|  311|Caenorhabditis elegans Hypothetical pr...    33   0.28 
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu...    32   0.48 
Z74036-5|CAA98489.3|  171|Caenorhabditis elegans Hypothetical pr...    31   0.64 
AY190131-1|AAO33925.1|  171|Caenorhabditis elegans CNB-1 protein.      31   0.64 
Z80216-5|CAB02282.1|  190|Caenorhabditis elegans Hypothetical pr...    31   0.84 
L33681-1|AAA85632.1|  190|Caenorhabditis elegans neuronal calciu...    31   0.84 
AF497824-1|AAM18102.1|  644|Caenorhabditis elegans putative Na-H...    30   1.9  
Z73973-1|CAA98266.1|  357|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC024858-1|AAF60872.2|  196|Caenorhabditis elegans Hypothetical ...    29   3.4  
U41543-10|AAP40531.1|  374|Caenorhabditis elegans Hypothetical p...    29   4.5  
U41543-9|AAB37021.2|  453|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF016449-3|AAG23997.2|  337|Caenorhabditis elegans Serpentine re...    28   5.9  

>Z72511-1|CAA96655.1|  186|Caenorhabditis elegans Hypothetical
           protein F55A11.1 protein.
          Length = 186

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 48/131 (36%), Positives = 76/131 (58%), Gaps = 8/131 (6%)
 Frame = +1

Query: 259 HYKPMGTGSFTGDSQLLHDAKHLEE--DSKVLTPAMLASMTPEELEFHYFSIHDFDRNTK 432
           H +P G   F G+     D  H++E  D KV  P   A+MTPE+L+FHYF++HD D+N K
Sbjct: 42  HAQP-GQQQFGGEQA--RDEHHIKEHLDGKV-DPT--ANMTPEQLQFHYFNMHDLDKNGK 95

Query: 433 LDGSEMLKAVYHTLDHESPNP---DDDSSIEPEANDLDSFI---VLVDRTLQFDDTDGDG 594
           LDG E++KA+ H    E+P P    ++++   +   L S +    ++D  L+ DD + DG
Sbjct: 96  LDGVELIKAITH-FHAENPGPQHTQNNANANHQPPPLPSEVELETMIDSILKDDDFNADG 154

Query: 595 YVSYPEYRAAR 627
           ++ Y E+  A+
Sbjct: 155 FIDYGEFLKAQ 165


>Z72513-3|CAA96671.2|  127|Caenorhabditis elegans Hypothetical
           protein T04F3.4 protein.
          Length = 127

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
 Frame = +1

Query: 280 GSFTGDSQLLHDAKHLEEDSKVLTPAMLASMTPEELEFHYFSIHDFDRNTKLDGSEMLKA 459
           G+   + + +HD +H+++  +      +  +T E+  FHYFS+HD +++  +DG E+LKA
Sbjct: 20  GAKFAEEKEVHDEEHIKQHLE--NKIEVEKLTEEQQRFHYFSMHDLNKDNFIDGIEILKA 77

Query: 460 VYHTLD-HESPNPDDDSSIEPEANDLDSFIVLVDRTLQFDDTDGDGYVSYPEY 615
           + HT D H+S +P   S  E E         LVD  L   D +GDG + Y EY
Sbjct: 78  LTHTHDAHDSGHPVPVSD-EAETER------LVDAVLDDLDFNGDGVIDYGEY 123


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
            glutamine tract) toxicityenhancer protein 1, isoform a
            protein.
          Length = 1081

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +1

Query: 484  SPNPDDDSSI------EPEANDLDSFIVLVDRTLQFDDTDGDGYVSYPEYRAARARNPSK 645
            SP+ D+D  I      + E +D DSF+V  D  +++++ D D  +     R  R+ + SK
Sbjct: 862  SPSEDEDDDIGSFVVSDNEDDDADSFVVGDDEPIEYEEEDEDDMIERRSSRKRRSDSRSK 921

Query: 646  KASRILDNR 672
            K++   D R
Sbjct: 922  KSATPTDRR 930


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
            glutamine tract) toxicityenhancer protein 1, isoform b
            protein.
          Length = 1647

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +1

Query: 484  SPNPDDDSSI------EPEANDLDSFIVLVDRTLQFDDTDGDGYVSYPEYRAARARNPSK 645
            SP+ D+D  I      + E +D DSF+V  D  +++++ D D  +     R  R+ + SK
Sbjct: 862  SPSEDEDDDIGSFVVSDNEDDDADSFVVGDDEPIEYEEEDEDDMIERRSSRKRRSDSRSK 921

Query: 646  KASRILDNR 672
            K++   D R
Sbjct: 922  KSATPTDRR 930


>L23651-2|ABA54424.1|  124|Caenorhabditis elegans Hypothetical
           protein C29E4.14 protein.
          Length = 124

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 20/79 (25%), Positives = 44/79 (55%)
 Frame = +1

Query: 379 EELEFHYFSIHDFDRNTKLDGSEMLKAVYHTLDHESPNPDDDSSIEPEANDLDSFIVLVD 558
           ++ +F+YF + D +++  LDG E+ K +       + + D+ + ++ E  ++ + +VL +
Sbjct: 53  KDRKFYYFKVGDTNQDNHLDGVELFKMI-------TEHSDEKTKMDVEMIEVQADLVLSE 105

Query: 559 RTLQFDDTDGDGYVSYPEY 615
                 D +GDG +S+ EY
Sbjct: 106 L-----DKNGDGMISFSEY 119


>AF078783-5|AAC26922.1|  236|Caenorhabditis elegans Hypothetical
           protein H10E21.4 protein.
          Length = 236

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
 Frame = +1

Query: 397 YFSIHDFDRNTKLDGSEMLKAVYH------TLDHE---SPNPDDDSSI---EPEANDLDS 540
           YF   D DRN  LD SE +  VY        +D+E     + +DD  +   E E    D+
Sbjct: 54  YFQRFDLDRNGHLDISEFVPLVYEMSRRPVDMDYEFFKKMDLNDDGIVDKAEVEKIRKDN 113

Query: 541 FIVLVDRTLQFDDTDGDGYVSYPEYR 618
              ++D  L   DT+ DG ++Y E++
Sbjct: 114 NDRIIDGILSIADTNRDGQLTYAEFK 139


>Z81072-1|CAB03019.1|  311|Caenorhabditis elegans Hypothetical
           protein F30A10.1 protein.
          Length = 311

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
 Frame = +1

Query: 355 AMLASMTPEELEFHY-FSIHDFDRNTKLDGSEMLKAVYHTLDHESPNPDDDSSIEPEAND 531
           ++ + M P +L+  Y F I+D+D +  L   ++ K +       S   D+ S +E E   
Sbjct: 220 SVFSEMAPLQLKLKYAFRIYDYDGDELLGHDDLSKMI------RSLTRDELSDVEVE--- 270

Query: 532 LDSFIVLVDRTLQFDDTDGDGYVSYPEYRAARARNP 639
                 +++R ++  D DGD  +++ E+    +R+P
Sbjct: 271 -----FIIERIIEEADLDGDSSINFAEFEHVVSRSP 301


>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
           protein 1 protein.
          Length = 1010

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
 Frame = +1

Query: 298 SQLLHDAKHLEEDSKVLTPAMLASMTPEELEFHYFSIHD----FDRNTKLDGSEMLKAVY 465
           S ++  A+ LE+D    TP +LAS +         ++H+     + + +LD + +LK + 
Sbjct: 543 SSMIDVAQKLEDDGSSKTPVILASQSASLATKEPSALHNSSATLNNSMELDNNTLLKTMQ 602

Query: 466 HTLDHESPNPDDDSSIEPEAN-DLDSFIVLVDRTLQFDDTDGDG 594
            T   +     +  ++E  +N + + F    D TLQ +DT   G
Sbjct: 603 ITTCEDISMVHESIAVELNSNKEQEQF---GDETLQKNDTSNTG 643


>Z74036-5|CAA98489.3|  171|Caenorhabditis elegans Hypothetical
           protein F55C10.1 protein.
          Length = 171

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 550 LVDRTLQFDDTDGDGYVSYPEY 615
           +VD+T+ F D DGDG +S+ E+
Sbjct: 132 IVDKTILFHDKDGDGKISFQEF 153


>AY190131-1|AAO33925.1|  171|Caenorhabditis elegans CNB-1 protein.
          Length = 171

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 550 LVDRTLQFDDTDGDGYVSYPEY 615
           +VD+T+ F D DGDG +S+ E+
Sbjct: 132 IVDKTILFHDKDGDGKISFQEF 153


>Z80216-5|CAB02282.1|  190|Caenorhabditis elegans Hypothetical
           protein F10G8.5 protein.
          Length = 190

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 364 ASMTPEELEFHYFSIHDFDRNTKLDGSEMLK---AVYHTLDHESPNPDDDS 507
           +S TPE+     F ++D D N  +D  EM+K   A+Y  L  E     DDS
Sbjct: 95  SSGTPEQKLEWAFRMYDIDGNGTIDEKEMIKIIEAIYEMLGPEVTKSADDS 145


>L33681-1|AAA85632.1|  190|Caenorhabditis elegans neuronal calcium
           binding protein protein.
          Length = 190

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 364 ASMTPEELEFHYFSIHDFDRNTKLDGSEMLK---AVYHTLDHESPNPDDDS 507
           +S TPE+     F ++D D N  +D  EM+K   A+Y  L  E     DDS
Sbjct: 95  SSGTPEQKLEWAFRMYDIDGNGTIDEKEMIKIIEAIYEMLGPEVTKSADDS 145


>AF497824-1|AAM18102.1|  644|Caenorhabditis elegans putative Na-H
           exchanger isoform 2 protein.
          Length = 644

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 541 MSLNRLPPVLLKNRHLDSDFHGLKCDRQLLTFPSR-PISYF 422
           MSL R P VL+    L   + G +C+ +   +PSR PI+YF
Sbjct: 1   MSLLRRPWVLVVGLLLIMSYVGAECEEEEKEYPSRYPIAYF 41


>Z73973-1|CAA98266.1|  357|Caenorhabditis elegans Hypothetical
           protein F25D1.2 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 300 RVASKGTCPHWFVMMVRTFHRRLPRRMM 217
           +VASK  C  WF+  +R  H  + +R++
Sbjct: 323 KVASKSRCVMWFLASIRFLHHSMKKRVL 350


>AC024858-1|AAF60872.2|  196|Caenorhabditis elegans Hypothetical
           protein Y71H2AL.1 protein.
          Length = 196

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 550 LVDRTLQFDDTDGDGYVSYPEY 615
           + DRT++  D DGDG++++ E+
Sbjct: 156 IADRTMREADRDGDGFITFQEF 177


>U41543-10|AAP40531.1|  374|Caenorhabditis elegans Hypothetical
           protein F46H5.2c protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 262 NDGEDVPPASAPADDV 215
           N GED+PPAS+PA  +
Sbjct: 36  NHGEDIPPASSPATSI 51


>U41543-9|AAB37021.2|  453|Caenorhabditis elegans Hypothetical
           protein F46H5.2a protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 262 NDGEDVPPASAPADDV 215
           N GED+PPAS+PA  +
Sbjct: 36  NHGEDIPPASSPATSI 51


>AF016449-3|AAG23997.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein15 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -3

Query: 178 VKDMQIWILIQSFLY*FIHSRS 113
           + +MQI IL+QSFL+ F HS S
Sbjct: 250 LSNMQIKILLQSFLFCFFHSVS 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,713,474
Number of Sequences: 27780
Number of extensions: 365222
Number of successful extensions: 1085
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)