Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n14
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    29   0.92 
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    27   2.8  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    26   4.9  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   6.5  

>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = -3

Query: 392 HEKASSEQSVDFNGKEFFVVHEMIKVSHCDVFDDLRVFDHQYRSCAFDVTYVPLTRECFV 213
           HE  SS+  V+             K+S  D  +DLR+       C   +  V   +EC  
Sbjct: 160 HEVPSSKSDVNVQMLARLKSKSRQKISSSDPLEDLRL---TLTECLNPINIVQAPKECAA 216

Query: 212 YLINILPKMT 183
            L+N++  +T
Sbjct: 217 ILVNLMSNIT 226


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 492 KNIVEYLKGHQLEDVDVDDLMRR 560
           KN+ +Y +G++L+DVD +D + R
Sbjct: 374 KNLDDYGEGNRLDDVDAEDKIAR 396


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 84  VYKKIHYFYDARGVKYQPGIPVLGNILKSSLGTG-HFWEDIDKIYKAF 224
           ++KKI Y +      + P   +  NILK   GT     ED+D++Y  +
Sbjct: 497 IFKKICYLWLFLYCPFTPFQILFSNILKMEKGTSDEKIEDLDRMYSLY 544


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 258 CLRCNLCTSHQGMLCISYQYPPKNDQCPMSFSEYYR 151
           C RC+ C S           P  N Q P+  ++Y+R
Sbjct: 139 CFRCHDCNSLVASKFFPIDDPTLNKQVPLCETDYFR 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,074
Number of Sequences: 5004
Number of extensions: 67782
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)