Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n14
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...   114   9e-28
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    44   2e-06
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.99 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.0  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   7.0  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   7.0  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   7.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.2  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score =  114 bits (274), Expect = 9e-28
 Identities = 68/237 (28%), Positives = 121/237 (51%), Gaps = 5/237 (2%)
 Frame = +3

Query: 36  EVIVFLITTLVAYYLYVYKKIHYFYDARGVKYQPGIPVLG---NILKSSLGTGHFWEDID 206
           E++  +    +A Y Y+      F+ +RGV     +P  G   +++     T HF +DI 
Sbjct: 6   EILCGIAVLFLALYYYLTSTFD-FWKSRGVVGPKPVPFFGTTKDLILVKKSTAHFVKDI- 63

Query: 207 KIYKAFPGERYIGYIEGTTPILMIKDPEIIKNITVRDFDHFVNHKEFFPVEIDALFGGSL 386
             Y+ +  E  +G     +P L++ DPE+IK+I +RDF  F N +     E        L
Sbjct: 64  --YEKYKNEPMVGLYATRSPFLLLNDPELIKDILIRDFSKFAN-RGLGVFERTEPLSPHL 120

Query: 387 FMMKDDKWRDMRTTLSPAFTGSKMRLMLPFMIDISKNIVEYLKG--HQLEDVDVDDLMRR 560
             ++ ++WR +R+ LSP FT  K++ M   +I+ S N+  YL     + E ++  +L  R
Sbjct: 121 LNLEVERWRPLRSRLSPIFTSGKLKEMFYLIIECSLNLETYLDKLIEKNEPIECRELTAR 180

Query: 561 YTNDVIASAGFGLQVNSLVDKDNEFYECGQAMFSTSWPQRFKMILAAQFPTLAKKIG 731
           +T DVI S  FG+ ++S+ ++++EF   G+ +F+ ++    +M L    P L   +G
Sbjct: 181 FTTDVIGSCAFGIDMSSMTNENSEFRRMGREVFAVNFMNVMRMKLKQFMPRLYDLLG 237


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 44/205 (21%), Positives = 86/205 (41%), Gaps = 3/205 (1%)
 Frame = +3

Query: 51  LITTLVAYYLYV-YKKIHYFYDARGVKYQPGIPVLGNILKSSLGTGHFWEDIDKIYKAFP 227
           LI  L+ Y++Y    + H    A  +   P +P++GN L         +  + K  + F 
Sbjct: 19  LIPALILYFIYFRISRRHLLELAEKIPGPPALPLIGNALDLFGSPDAMFSQVLKKAENFK 78

Query: 228 GERYIGYIEGTTPILMI--KDPEIIKNITVRDFDHFVNHKEFFPVEIDALFGGSLFMMKD 401
               I ++     I +I  +D EII +  V   D    ++ F P       G  L +   
Sbjct: 79  DVVKI-WVGPKLVICLIDPRDVEIILSSNVY-IDKSTEYRFFKP-----WLGDGLLISTG 131

Query: 402 DKWRDMRTTLSPAFTGSKMRLMLPFMIDISKNIVEYLKGHQLEDVDVDDLMRRYTNDVIA 581
            KWR+ R  ++P F  + ++  +      ++++VE ++    ++ D  + M   T D++ 
Sbjct: 132 QKWRNHRKLIAPTFHLNVLKSFIDLFNANARSVVEKMRKENGKEFDCHNYMSELTVDILL 191

Query: 582 SAGFGLQVNSLVDKDNEFYECGQAM 656
               G+   S   +D+  +E   A+
Sbjct: 192 ETAMGV---SKPTRDHNAFEYAMAV 213


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 180 TGHFWEDIDKIYKAFPGERYI 242
           T H W    +IYKA  G R+I
Sbjct: 469 TLHHWHHCPEIYKAIEGIRFI 489


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 147 PVFLVGT*LLLHRRSNVFSCKRINNTQQVWLSKI 46
           PV  V   +LLH +   F CK I +T  ++  K+
Sbjct: 9   PVLFVIINVLLHGQVICFVCKDITSTSALYRLKL 42


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
 Frame = +3

Query: 33  VEVIVFLITTLVAYYLYVYKKIHY--FYDARGVKYQ----PGIPVLGNILKSSL 176
           V+ + F I  L  +   +Y+ IH     + RG + Q     GI VLGNI+++S+
Sbjct: 300 VDELNFDIQDLERWRDRIYEAIHTGSVINTRGERIQLTEKNGIDVLGNIMEASI 353


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 131 VLDSSCIVEVMYFLVNV*IIRNKCGYQKYDDFHEHFR 21
           V  SSC ++V +F  +V     K G   YD F    R
Sbjct: 148 VYKSSCSIDVEFFPYDVQTCVLKLGSWTYDGFKVDLR 184


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 183 QCPMSFSEYYREPVFLVGT*LLLHRRSNVFSCK 85
           Q   SFS  Y E V++    L +H R++   CK
Sbjct: 12  QAKKSFSCKYCEKVYVSLGALKMHIRTHTLPCK 44


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 147 VLGNILKSSLGTGHFWEDIDKI 212
           VLG++    L T H W+  D+I
Sbjct: 4   VLGSLFLLLLSTSHGWQIRDRI 25


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 147 VLGNILKSSLGTGHFWEDIDKI 212
           VLG++    L T H W+  D+I
Sbjct: 4   VLGSLFLLLLSTSHGWQIRDRI 25


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 263 SCAFDVTYVPLTRE 222
           SC  DVTY P  ++
Sbjct: 150 SCTIDVTYFPFDQQ 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,491
Number of Sequences: 438
Number of extensions: 4710
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)