Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n12
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0054 - 773395-774518,776957-777124,777455-778376                 29   2.9  
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445...    28   8.8  

>10_01_0054 - 773395-774518,776957-777124,777455-778376
          Length = 737

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +2

Query: 356 CQECPSCACPSDFN-----PSTPSMYDCRKYGHCLPSNDLITRFECLPNFP 493
           C++   CA P+ +       +TP  Y+CR +    PS D   + EC   FP
Sbjct: 306 CKDIDECAHPNKYPCHGVCRNTPGDYECRCHTGYQPSGDGPKKQECSSKFP 356


>01_05_0658 - 24043655-24043945,24044003-24044257,24044359-24044530,
            24044617-24044844,24045688-24045821,24045908-24045991,
            24046202-24046492,24046571-24046903,24047002-24047246,
            24047476-24047742,24048305-24048465,24048556-24048872,
            24048966-24049247,24049325-24049626,24049699-24049789,
            24049881-24049934,24050028-24050104,24050192-24050367,
            24051331-24051540,24051626-24052029
          Length = 1457

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 609  INANRKKSCADRRNIPDIDNSNLYQHHYQESVVHRNIPVGKLGRHSNRVMRSFEGKQ 439
            +N  R   C   +  P ID    +   +        I VG LG HS+ +++ FEG Q
Sbjct: 1047 VNTGRTVVCTIHQ--PSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQ 1101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,098,112
Number of Sequences: 37544
Number of extensions: 336964
Number of successful extensions: 647
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)