Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n12
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr...    32   0.48 
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    32   0.48 
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p...    32   0.48 
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    32   0.48 
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    32   0.48 
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    29   4.5  
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U97194-5|AAB52448.1|  442|Caenorhabditis elegans Hypothetical pr...    28   6.0  
L16622-6|AAA27913.2|  408|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
            K08E5.3b protein.
          Length = 3183

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 374  CACPSDFNPSTPSMYDCRKYGHCLPSNDLIT 466
            CA P   NP+ P   D RK   CLP  ++ T
Sbjct: 977  CAYPGSCNPNDPMSCDVRKRQQCLPRGNIYT 1007


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
            K08E5.3a protein.
          Length = 3767

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 374  CACPSDFNPSTPSMYDCRKYGHCLPSNDLIT 466
            CA P   NP+ P   D RK   CLP  ++ T
Sbjct: 1561 CAYPGSCNPNDPMSCDVRKRQQCLPRGNIYT 1591


>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
            protein K08E5.3b protein.
          Length = 3183

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 374  CACPSDFNPSTPSMYDCRKYGHCLPSNDLIT 466
            CA P   NP+ P   D RK   CLP  ++ T
Sbjct: 977  CAYPGSCNPNDPMSCDVRKRQQCLPRGNIYT 1007


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
            protein K08E5.3a protein.
          Length = 3767

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 374  CACPSDFNPSTPSMYDCRKYGHCLPSNDLIT 466
            CA P   NP+ P   D RK   CLP  ++ T
Sbjct: 1561 CAYPGSCNPNDPMSCDVRKRQQCLPRGNIYT 1591


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
            adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 374  CACPSDFNPSTPSMYDCRKYGHCLPSNDLIT 466
            CA P   NP+ P   D RK   CLP  ++ T
Sbjct: 1561 CAYPGSCNPNDPMSCDVRKRQQCLPRGNIYT 1591


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +2

Query: 341 TNKETCQECPSCACPSDFNPSTPSMYD---CRKYGHCLPSNDLITRFECLPNFPTGIF 505
           T++ T  ECPS    +D         D   C   GHC+     +    CLP+F TGI+
Sbjct: 261 TSRTTQCECPSGFMGADCKELQARPCDREPCLNGGHCVDDGQNLFTCFCLPSF-TGIY 317


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = +2

Query: 347 KETCQECPSCA---CPSDFNPSTPSMYDC 424
           +  CQECPSC     P  FNP     ++C
Sbjct: 42  RSVCQECPSCCGNDGPQPFNPVFNIHFNC 70


>U97194-5|AAB52448.1|  442|Caenorhabditis elegans Hypothetical
           protein C37A2.3 protein.
          Length = 442

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 513 VHRNIPVGKLG-RHSNRVMRSFEGKQWPYFRQSYMLGVDG 397
           VHR+ P+ KLG R S+ V   FE  + P    SY++G +G
Sbjct: 250 VHRSTPLDKLGMRSSDTVQLFFEDVRVP---SSYIIGEEG 286


>L16622-6|AAA27913.2|  408|Caenorhabditis elegans Hypothetical
           protein C02D5.1 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 513 VHRNIPVGKLG-RHSNRVMRSFEGKQWPYFRQSYMLGVDG 397
           VHR+ P+ KLG R S+ V   FE  + P    SY++G +G
Sbjct: 216 VHRSTPLDKLGMRSSDTVQLFFEDVRVP---SSYIIGEEG 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,606,419
Number of Sequences: 27780
Number of extensions: 326407
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)