Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n08
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    29   0.89 
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    28   1.6  
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   3.6  
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa...    27   3.6  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   3.6  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   8.3  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    25   8.3  

>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 544 GSNGEKRELLLAHLYKLVDLMKILSLTVNKRVATWQPVEDPEVSRITE-QILREI 705
           G+N    E  L  LY+L DL K+L   V+ +    +P E  E+  +T   +LR+I
Sbjct: 729 GANTNHTERPLEKLYELYDLAKVLFDFVSPQEYGIEPKEKLEIGLLTSVPLLRQI 783


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 139 KRECNDRIKTLRSVLEKCQDQKTKELEHRLEALEESCKLYWFAAKCNLSTA---RSAALD 309
           KR   +  + + ++ EK +++K KE   R+ ALEE    Y    K N  TA   R     
Sbjct: 39  KRSPEELKQAIEALREKAKEKKEKE---RILALEEKKTNYKILQKSNDETAQAMRKMQDQ 95

Query: 310 ATLNDLNDIQRR 345
           A L DL  I+++
Sbjct: 96  ARLRDLQKIRQQ 107


>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +1

Query: 139 KRECNDRIKTLRSVLEKCQDQKTKELEHRLEALEESCKLYWFAAKCNLSTARSAALDATL 318
           +RE     K  R+ LE   ++  K  E  L+ LE+  K+     +  L   R  ALD   
Sbjct: 92  EREQKSARKVKRAELE---EKLAKRREQELQELEKQEKIEAEILESRLQEQRKVALDELE 148

Query: 319 NDLNDIQR 342
            D ND+++
Sbjct: 149 LDRNDLKK 156


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 286  WTNCTWLRTSITCNFPPKLQVDAQAPSSSGL 194
            + NC+W +T I+  FP K Q +      SG+
Sbjct: 964  YKNCSWHKTFISDVFPTKFQFNVYNFDESGM 994


>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +1

Query: 154 DRIKTLRSVLEKCQDQKTKELEHRLEALE 240
           +RIK   + ++  ++QK KELEH +++LE
Sbjct: 48  ERIKACDAGIQTSEEQK-KELEHTMQSLE 75


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 23/83 (27%), Positives = 43/83 (51%)
 Frame = +1

Query: 112 TSQSAQFS*KRECNDRIKTLRSVLEKCQDQKTKELEHRLEALEESCKLYWFAAKCNLSTA 291
           T+ SAQ S  + CN+RI + +++  K Q     E + +L+ + +  +   +A   NL++A
Sbjct: 404 TTYSAQSSSVKNCNERIPSAKAL--KKQKHLVPENKSKLQYVWQKKESLPYA---NLTSA 458

Query: 292 RSAALDATLNDLNDIQRRVIKTL 360
            +     + N  ND   R+ +TL
Sbjct: 459 SNTHFFLSENQ-NDTSERLTRTL 480


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 173 DQFWRNAKTRRRRSLSIDLKLWRKVASYTGSQPSA-IC 283
           +QF  N  T+  +S +ID +LW +  + T   P+  IC
Sbjct: 250 NQFLANTLTQWLKSQNIDAELWAEEDAKTSQHPAIWIC 287


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = -3

Query: 121 TEKYEISHTYREYREGVQKAI 59
           TEK+ ++ +Y+++RE VQKAI
Sbjct: 133 TEKF-VTSSYKKHREEVQKAI 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,212
Number of Sequences: 5004
Number of extensions: 54358
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)