Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n08
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1164 + 34628391-34628663,34628763-34628816,34628906-346291...    35   0.057
11_06_0577 - 25158833-25162864                                         30   2.1  
04_04_1489 - 33938426-33939363,33939429-33939813                       28   8.6  

>02_05_1164 +
           34628391-34628663,34628763-34628816,34628906-34629197,
           34629316-34629764
          Length = 355

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 29/106 (27%), Positives = 43/106 (40%)
 Frame = +1

Query: 103 KFHTSQSAQFS*KRECNDRIKTLRSVLEKCQDQKTKELEHRLEALEESCKLYWFAAKCNL 282
           +F   Q    S   EC DR + +RS      D+  +E   R +   E    ++   +  L
Sbjct: 81  RFSAGQQPSASEDEECPDRGELVRST-----DKHEREFMERADEELEKVNAFYTGQEAEL 135

Query: 283 STARSAALDATLNDLNDIQRRVIKTLLPANEVQGAVTLRKRPPVPP 420
             AR  AL   L  L D+ +R++     A   +G    R  PP PP
Sbjct: 136 -LARGDALLEQLRILADV-KRILADHAAARRARGLARSRSMPPPPP 179


>11_06_0577 - 25158833-25162864
          Length = 1343

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +1

Query: 139 KRECNDRIKTLRSVLEKCQDQK-TKELEHRLEALEESCKLYWFAAKCNLSTARSAALDAT 315
           KR  +DRI+ L++ ++  +D+K T E+E  + + +E   L        L     A L   
Sbjct: 346 KRNFDDRIEQLKTKIDSIKDKKTTNEIEKTVRS-QEKVNLNALVYNKPLGILFLALLPPM 404

Query: 316 LNDLNDIQRRVIKTL 360
            ND+  + RR ++TL
Sbjct: 405 PNDVKSV-RRALRTL 418


>04_04_1489 - 33938426-33939363,33939429-33939813
          Length = 440

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +1

Query: 103 KFHTSQSAQFS*KRECNDRIKTLRSVLEKCQDQKTKELEHRLEA-LEESCKLYWFAAKCN 279
           K H S    +   +  N+R+      L++  D      +H     +  SC L   +A C+
Sbjct: 336 KDHASLEVLYEELKTSNERLTIFHEKLKEAHDNLLSTTQHGAHIDVGISCDLLDDSATCH 395

Query: 280 LSTARSAALDATLNDLNDI 336
           ++   S+++  + +DL D+
Sbjct: 396 IAHVASSSIYTSCDDLMDM 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,854,765
Number of Sequences: 37544
Number of extensions: 381670
Number of successful extensions: 1316
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)