Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n08
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL590342-4|CAC35861.1|  117|Caenorhabditis elegans Hypothetical ...    30   1.9  
AL032622-6|CAA21501.1|  117|Caenorhabditis elegans Y66A7A.7 prot...    30   1.9  
AL021480-3|CAA16328.1|  410|Caenorhabditis elegans Hypothetical ...    29   4.4  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    28   5.9  
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AL590342-4|CAC35861.1|  117|Caenorhabditis elegans Hypothetical
           protein Y66A7A.7 protein.
          Length = 117

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +1

Query: 274 CNLSTARSAALDATLNDLNDIQRRVIKTLLPANEV 378
           C  S  R  +LDATL ++ND  ++V  +LL A EV
Sbjct: 29  CRCSNCRKMSLDATLENINDTLQQV-ASLLKAVEV 62


>AL032622-6|CAA21501.1|  117|Caenorhabditis elegans Y66A7A.7
           protein.
          Length = 117

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +1

Query: 274 CNLSTARSAALDATLNDLNDIQRRVIKTLLPANEV 378
           C  S  R  +LDATL ++ND  ++V  +LL A EV
Sbjct: 29  CRCSNCRKMSLDATLENINDTLQQV-ASLLKAVEV 62


>AL021480-3|CAA16328.1|  410|Caenorhabditis elegans Hypothetical
           protein Y39E4A.2b protein.
          Length = 410

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 265 RTSITCNFPPKLQVDAQAPSSSGLGISPELIVMF*YGH 152
           R S + N P  ++ D Q+ SSS  G+S + I    +GH
Sbjct: 18  RDSSSSNLPANIEEDTQSVSSSDSGVSADSIDHHHHGH 55


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +1

Query: 145  ECNDRIKTLRSVLEKCQDQKTKELEHRLEALEESCKLYWFAAKCNLSTARSAALDATLND 324
            E  D++  + S   K  D  TK+  H L  L     + W     N+   R A L+A+L  
Sbjct: 2619 ERKDKMAEINSQANKIVDTYTKDEAHNLSHLLSRLNMSWTKFNDNI-RIRRAVLEASLRS 2677

Query: 325  LND 333
              D
Sbjct: 2678 XRD 2680


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +1

Query: 145  ECNDRIKTLRSVLEKCQDQKTKELEHRLEALEESCKLYWFAAKCNLSTARSAALDATLND 324
            E  D++  + S   K  D  TK+  H L  L     + W     N+   R A L+A+L  
Sbjct: 2619 ERKDKMAEINSQANKIVDTYTKDEAHNLSHLLSRLNMSWTKFNDNI-RIRRAVLEASLRS 2677

Query: 325  LND 333
              D
Sbjct: 2678 RRD 2680


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +1

Query: 145  ECNDRIKTLRSVLEKCQDQKTKELEHRLEALEESCKLYWFAAKCNLSTARSAALDATLND 324
            E  D++  + S   K  D  TK+  H L  L     + W     N+   R A L+A+L  
Sbjct: 2619 ERKDKMAEINSQANKIVDTYTKDEAHNLSHLLSRLNMSWTKFNDNI-RIRRAVLEASLRS 2677

Query: 325  LND 333
              D
Sbjct: 2678 RRD 2680


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,939,954
Number of Sequences: 27780
Number of extensions: 318615
Number of successful extensions: 1080
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)