Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n08
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   2.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.9  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   3.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   3.9  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   8.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +2

Query: 239 RKVASYTGSQPSAICPL-PEAQP 304
           R+  +YT   P+  CPL P  QP
Sbjct: 205 RETPNYTACPPTLACPLNPNPQP 227


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 194 KTRRRRSLSIDLKLWR-KVASY 256
           K  R R ++ID+ LW+ + A Y
Sbjct: 64  KAERERGITIDIALWKFETAKY 85


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 331 DIQRRVIKTLLPANEVQGAVTLRKRPPVPPKPQM 432
           DI+ R++KT    + VQ  +T    P V   P +
Sbjct: 161 DIEMRILKTKNECDHVQFLITNTSGPGVVSNPMI 194


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 331 DIQRRVIKTLLPANEVQGAVTLRKRPPVPPKPQM 432
           DI+ R++KT    + VQ  +T    P V   P +
Sbjct: 161 DIEMRILKTKNECDHVQFLITNTSGPGVVSNPMI 194


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 194 KTRRRRSLSIDLKLWR 241
           K  R R ++ID+ LW+
Sbjct: 7   KAERERGITIDIALWK 22


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 194 KTRRRRSLSIDLKLWR 241
           K  R R ++ID+ LW+
Sbjct: 64  KAERERGITIDIALWK 79


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 139 FTKIARTEKYEISHTYREYREGVQKAIFFKLCI 41
           F KIA T + ++   +    +    A+ FKLC+
Sbjct: 110 FHKIALTCEDDVHRKFLHVNDECDVALSFKLCM 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,702
Number of Sequences: 438
Number of extensions: 3876
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)