Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3n06
         (209 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       20   3.7  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               19   6.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      19   8.5  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    19   8.5  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 19.8 bits (39), Expect = 3.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 95 SIKVFTSAFLXNW 57
          SIK+ T+  L NW
Sbjct: 4  SIKIITTTGLENW 16


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 19.0 bits (37), Expect = 6.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 79  VKTLILLXISLCFDLY 126
           +KT+++L  +LC   Y
Sbjct: 1   MKTIVILLFTLCIVSY 16


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 5/5 (100%), Positives = 5/5 (100%)
 Frame = +3

Query: 192 HHHLH 206
           HHHLH
Sbjct: 73  HHHLH 77


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 110 RLIXKSIKVFTSAFLXNWXE 51
           RLI +S  V  +A+  +W +
Sbjct: 179 RLIEESSSVMEAAYSCHWYD 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,057
Number of Sequences: 438
Number of extensions: 144
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3039192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)